RNA id: XM_034302993.1


Basic Information

Item Value
RNA id XM_034302993.1
length 5456
RNA type mRNA
GC content 0.48
exon number 17
gene id eif2ak3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19669405 ~ 19700122 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCAGGTAGAACGCCAATAACATGGTGCCTCGGCGACTTGTCTGTTTACGCCAAGAAACGGGAACGGAGAGTTGCTGGAAAACgtttaaatttgtttgttttgttttgtaagcCGCACACAACGCTATtttagagttgtttttttttatatttgatttcaCATTTTCGGTTATGGGATTGCTTGTGTACTGATGTGTCACTTGTCCCAATGGAAAGGGGGCTTCGCTTTGGCAACGTGGGCATATCCCTTGtgctgttgttgatgttgaGAGCTGTGAGTGTGAGGACTGTGCAGTTTAACTCTCTGTCCCGGACAGAGCCGGAGACCGCGGACACGGTGATGGAGCGCGGGCTGGAGAGCAGCATCGCGGACGCCACGGTGGAGGACGACGAGAGCAGCTCGGCTGGAGACAGTGAGGAGCCTGGCGGAGACAACGACACAAACTTCCACCAGCACGGCAGCTTGGTGATCATCAGCACTCTGGATGGGCGGATTGCGGCTCTGGATCCTCTGAATCAAGGGCGCAAGCAGTGGGACTTGGACGTGGGCTCTGGCTGCCTGCTGTCCTCCAGCCTCAGCAAACCAGAGGTGTTTGGGAATAAGATGTTCATCCCATCTCTGGATGGAGCTTTGTTTCAGTGGAACAGGGACAGGGAGAGCATGGAGGCTGTCCCTTTTAGTGTGGAGTCCCTGCTCGACTCTTCTTACCGTGTTGGAGAGGACACCGTGCTGGTGGGAGGAAAATCACTCACCACCTACGGCCTGGGAATCTACAGTGGCAAGcTGAAGTATATCTGTTCGACCGTGGGCTGCAGTCATTGGGGAGAGGAGGAGACCGAGTcagaggacatgctgttactgcAGAGAACACAGAAAACCGTCAGAGCTGTGACCCCTCGCAGTGGCTTTGAGAAgtGGAACTTCAGTGTGGGAAACTTTCAGCTGAAGTTTGTTCCAGAGACCGATACACAGCTCAGCTTTTTGGAAGGGGAGACGGCCAATAAGGAGGCGTGGCATGAACTGCAACGTGACGGGCCACGTGTGATCCTGGAGGAAGCAGAAGCACACAGTCAAAACCATGCTAACGCACATGTACAGACAGAAGGCCTAGACCTGGTGATCAAAGTGTCTATTCCAGACTGGAAAGTTATGGCATTTAGCAGTGGACCAGGAGGACAGCTCATCTGGGAGCATCAGTTCTGCACGCCCATTGCCTCAGCCTGGTTGGTGGGAGGGGGAAAGGTGACCCCTATCAGTCTCTTTGATGACACCTCTTACACCGTCCAGCCAGAGAGTGAGATTCGGGAGGAGGACGATGACCTCATGGAGGAGGCGCGTGGAGCCACGGAGTCGAGCATTTATCTAGGGATGTTTCAAGGTCAGTTGTATTTACAGTCTTCGGTTCGAATGACAGAGAAATTTCCATCTAAGCCCAAAGCCCTGGACAGCCACCACTCTAGCAGAGACATCATTCCTCTTCCCACTGTCAAATGGAAGCCTCTCATCCACTCTCCTTCTCGCACTCCGGCACTCGTGGGGACAGAGGAGTTCGATAAATGTTTGAACAACGACAAATTTTCCTATGAGGAGTACAGCAATGGTGCTCTATCTATACTGCAATATCCACATGATAATGGATATTACTTCCCATACGGTACACGGTACCGTGGTCGGCGAGAGGTGACGGCAGTGAGTGTATTGCGTACAAGTGAGGCTGGAGGGATGAGGAGGAAGGACCCAGTGCTTCTTCTGCCGTGGTGGAAGGAGATCTTGGGCACCATAATCTTTTGCATTGCCGCTACCACATACATCGTTCGCAAGTTCTTCCACCCACACGCAGCGTACATACGGCAGCGGAAGGAGTCTGAGACACAGTGTCAGACAGACACCAAGTTTGAGATGGAAGCCAGTGAACCCAGGGAGGCAGTAACAGAGACTCGGCCCAGTGAATATGTGTCCAGGTACCTGACAGACTTTGAACCAGTGCAGTGTTTAGGGCGAGGTGGCTTTGGAGTTGTGTTTGAGGCACGGAACAAAGTAGACGACTGCAATTATGCCATCAAGAGGATCCGCTTACCCAACAGGGAGGTGGCCCGTGAAAAGGTGATGCGGGAAGTAAAGGCCTTAGCTAAACTGGAGCACCCAGGTATCATCCGTTACTTCAACGCGTGGCAGGAGAGCCCACCTCAGGGCTGGCAGGAGGAAATGGATCGACGCTGGCCTAAAGATGCCAGtgCTACTGATTGGCTGCTCAGCAGTCCTGACCACATGGAGGCTTTCTCTGTGAAGGTGCCAGTCTCCACTCCCTCTCCTCTGGATCTGCGGTCTGAGTGTGTGGCTGGTGGCGATGTAGGTGTGCTCGCTCAGGATCATGTGTGCGTGGATGGCTTGGGCCTGGACAGCATGATGTCGGATCAGGACAGCCATGCCGATGTTGACCCTGACCTGGAACTCTCGGGATCACCACATTCTTTTGAGCTCTGTCCTCCCCGCACAGTGACCCATAACGACTGCACCTCTTCTTCCTTTGACATCGTTTTTGAAGACTCTGGTTGTGATCAGCACGACAATGATGCCGAGCTCAGCAATTGTACATCGGTTCAGACGAAAAGCCCCTCTCACACGGGTTCCAGATCTCACCACACTGCTTCCTCAGGCCCGTTCACTTACTCTCCTCCTCGGCCATCGTCTCTGAAGCTGCCACCACAAGCCCCTACTCCTGCTCCACGGCTGGCCCTGACTCCCAAAGTCTACCTGTACATCCAGATGCAGCTGTGCAGGAAGGAGAACCTGAAGGACTGGATGGCACAGCGCTCTCAGCCTGAGCTCAGAGAGCACTCGCAGTGTCTCGCCATCTTTTTGCAGATCGCAGAGGCTGTCGACTTCATCCACAGCAAGGGACTCATGCACCGAGACCTGAAGCCCTCTAATATCTTCTTCACGCTGGATGATGTAGTGAAAGTTGGAGACTTTGGGCTGGTGACCGCTATGGATCAGGAAGAAGACGATGATGAAGAAATAAACACCCTCACCCCTATGCCAGCTTACGCTCGCCACACTGGCCAAGTGGGCACTAAACTCTACATGAGCccagaacagttTTCAGGGAACTCGTACTCTCATAAAGTGGATATTTACTCTTTGGGGTTGATCCTGTTTGAGCTGCTCTGCCCATTCCGCACACAGATGGAGAGACTCAGAACTCTCACCGAGGTCCGGGAGCTGCAGTTTCCAATGTCCTTCTGTAAAAACAATGTTCTGGAGgctcaGATGGTGCGCTCTATGCTCTCTCGCGTTCCTGCCGAGCGACCCGAAGCATCCGAGATCACAGAGACGCCACTGTTTCAGGAGCTTGAGGTGCCCTGCAGAATCAGACAGCGCTCGCGAACATACAGCGCCTCATCCACAGGCCGACCATCGCGACAGATATCCAGCTCCAGTTAAAACACAGACACGCCTACTGAGCTCTCTCTGACCCTCTCTCAGCACCTCAGTTGGAAGTGAACCGATTTTCTGAGGAGTGTCCTCACAATTTAAGCACACGCTATAATCTCAGTCTTTATCGCTAGAAAACAGGAGGCATTTTAGCTTCTCAGTCATTCCATCTCAagcacaaacccacacacagtcGCCTACACACAATGTCTCTGCCTCTCACCTCACCTGCCTCACTGCATTGGCTTTTCCTTACTGTCAAGGTCAGCCTCATGGCCTTCTCCCATCCTTTACAAGTTAAGAAAGTTGAAGACATTCACTCAGGAGAGAAGATGCTAACCAAACTGCTTGACTCCTCGCAGATCAGCTCAGATTCTGAAGCTCCATGATGGACGCGTCATCATCTTTACCTCAGTTGCTCTTCCATACCGCGCACACTCTCATGGATTTGTCGTTGTGGAAATGGAACATTATACAGTGCTGAATGAAGGAAAGTTGATTAATGAGCTGCTTTGGAACGCTGGTcgctcatcttttttttttttttttttttcttttcaaatagGAAGGAAGTTGCACAGGACTTGCTTCCTCTGAACTATTCCTTCATAAGAACTATTCCTTCCTATGAAcaattattttctcatttctatTGTAAATAGACCTAAACTCCAAAAGAGTGTGAGAAACTTGTTAATGGTGCATGATGGAAACTGCAGACATGGTTTGTTGGGCACAGTAGCCTTTCACTGGCACTTGGGGACTGTGGATCTGCCTTAGTAATGGAATAATAGACAATTCTGCCAACTTCTTAATTCTACTGAAAGGAATATGCGAATATTGTATGATTGTTTGATTGCTTTCTGACAGAATGATTAGAATCAAAGAGAGATTTTTGAAACTATACGTGTAAAGATGATGGTGTATAATACGTTTTCATTAATACCAAAACGGGTTTTGTACTCCCTCAAAATGAATTTCCTTTAGGACATCCAAATGACAGTGACTGACTGGAAACTTCATCCACGCACGTAACACACACCCTTTTAAAATCACTGTTTATAGGTTTATTTCCATAAAGGATTTTTTGATGGGTGGGAATATTTTTGGCACATGGTGCCATTTTTCTCTGACTGTTTCTGCATACATTGTCCCTTAAGATTTAATTGTGATAAAATCTCGAGATATAAGCTTAGACCTTGAGAGTATGGAGGTAGAATGGCTCTTTATTGATATGCGAGCAGTCTCTTTTTGTTTGCTGTCTgtaggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggagtgtgcaCAGCTCTCTAAATGACTAGACTAGTGCAGAAAGGATATCAGTTAATGACTTGTCATTGTTAATTACACTCATACAGACCTTTAGCAAGACCTTCAGGACATGCTTCACCTTTCACCCGTATTATACAGCTTTTGAGTTTCCTTATGTACTTTTGCTCAGccacagtgtttattttatttatttacttttttcatcAGCATGCCAGTGGAAGACAATGAATCCTTTAGTTTTCTGTGTCAGTATATGGCCATAGAACAAGGTTTTATAACGATTAGGCTGTTCCTTAGTCCACAAATGTGACTAATTCACGCAAATAATTGCATTGACCACATTCAGACCTGAATTTTTCGTTAATGTGTCACTGTAGTTCGATTATTTCAGGATATATATCCAGTTTCAGACGGCATTGCCTTTGCTGTTCTGACTTTTTCCCCGTAACGATTCCTGTTCTGATTCAACGCTCTTGTCAGTTTGGCTGACTGTCATCCATAACCTGTAATATTTGGGCACAATCTTTTCTCCTTTTGTCCTTGTAAAtatgttcttgtttttatttatgttctttGCAGAATCAATCCTTTTGGGTTGGTGATGTGTAAATGCACTTCATGCAGTGGAGTGTGTTGAAATATTGTGACTTCTTACAAGTcaaaattgaataaatattctATGAactttggtaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58214 lncRNA downstream 240680 19427746 ~ 19428725 (-) True G49232
TU58193 lncRNA downstream 268542 19400664 ~ 19400863 (-) True G49215
TU58155 lncRNA downstream 417542 19251593 ~ 19251863 (-) True G49184
TU58066 lncRNA downstream 478790 19190327 ~ 19190615 (-) True G49108
TU58001 lncRNA downstream 616654 19052527 ~ 19052751 (-) True G49053
TU58495 lncRNA upstream 14043 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA upstream 14296 19714418 ~ 19715420 (-) False G49484
TU58494 lncRNA upstream 47572 19747694 ~ 19751354 (-) False slc4a11
TU58636 lncRNA upstream 195576 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA upstream 258322 19958444 ~ 19964311 (-) True G49584
XM_034302619.1 mRNA downstream 1746 19614717 ~ 19667659 (-) True atrn
XM_034302620.1 mRNA downstream 1747 19614717 ~ 19667658 (-) False atrn
XM_026944643.2 mRNA downstream 293824 19374309 ~ 19375581 (-) False noto
XM_034303050.1 mRNA downstream 293824 19374309 ~ 19375581 (-) True noto
XM_026942251.2 mRNA downstream 306425 19357615 ~ 19362980 (-) True emx1
XM_026941796.2 mRNA upstream 957 19701079 ~ 19713506 (-) True rpia
XM_026943527.2 mRNA upstream 16478 19716600 ~ 19768134 (-) False slc4a11
XM_026943495.2 mRNA upstream 16478 19716600 ~ 19768134 (-) False slc4a11
XM_026943511.2 mRNA upstream 16478 19716600 ~ 19768133 (-) False slc4a11
XM_026943503.2 mRNA upstream 16478 19716600 ~ 19763473 (-) False slc4a11
XR_004577815.1 other downstream 1744 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 349672 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1056004 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2008021 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 2094983 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 657812 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 657866 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 657866 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1911652 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 2196062 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile