RNA id: XM_034302998.1


Basic Information

Item Value
RNA id XM_034302998.1
length 2277
RNA type mRNA
GC content 0.39
exon number 7
gene id cabp2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8909505 ~ 8926337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAAGCAGGAAGCATGAATACAATCGATGTCCCACAGGATAAGATTGTAAAAAAGGGATCCATTAAAAACAAGATCGAGAAGCTGAGGAGATGGAGCACCTCCCCAGGTGGGAGCTTCAAACACTCATCCAAAATGAAGACCCTCAGCTTGAGGTCACCCACCGAGGCAGAAGAAGACTTATGTAATGACGAGAATGAGCGCAGGAAACTCAGACCTATGGTGGCGTCTGTTTTTGGTCAGGACAGAGATCTCAGGCCAGAAGAAATTGAAGAACTGAAGGAAGCCTTCAAGGAGTTTGACAGGGATAAGGACGGCTTCATCAGCTGTAAAGATCTTGGCGAGTGCATGAGGACAATGGGCTACATGCCTACAGAGATGGAGCTGATTGAGCTCAGTCAGCAGATCTGTGGAGGCCGGGTGGACTTTGATGACTTTGTGGAACTAATGGGGCCTAAAATGTTGGCTGAGACAGCAGATATGATTGGAGTCAAGGAACTGAGAGATGCTTTTAGAGAGtTTGACTCTAATGGTGATGGTCAGATCAGTCTGGCGGAGTTGAGGGAGGCCATGAAGAAACTGATGGGTCAGCAGCTGAACCAAAGAGAGATTGATGAGATCCTGAGAGACGTGGACCTGAATGGAGATGGCTTAGTTGATTTTGAGGAGTTTGTGCGGATGATGTCTCGCTAAACCCACAAGTAAAGAAGAAAGACCAATGAATCTATTAAATCCTGctatgaagagagagaaatactaCCCATCTAAAAGAAAATAACCTAATGTAGTATATCTCATAATGCCCTcattttctatgtttttttttttttttaacgtttaaTGTAATGAACCTGAAagatctaatatctaatatctaatttAAGAGTCAGTAGTGGCAATTTATAAGATTATGTGGTTATAAACACATAATTCTCTAGCAGTGTCAAAGAATGTAGAAAACTGGCTGGCACATCACACatttcatctttaatatatttattatggtGTTATTGTATTCATATCAGTGATcgtaaatattttgtaatagttTTTTTCCCGTTTTATTAGCactacatatttatataaattatatatttggGCTTTAAATGCCGCAAAATATACTGCATATGTGGATCTTTTAACTTTCAAATGAAGTGACTGATGTCACACAAAGGTCATATGGCCATAATGAGAGTTACATAGTACAGTAAGAGGACAGATGCGATATAGCTTTTTCCAGCACAATCTAAAAACTGTGTAACAACTTCATTTGGATAATCCTGTATGCTCTTTATCAGAATTTACCTTCTCTTTTTGTGATCTTTCTTGTTCTGGTACAGACCAGGTAATATGATTCAAATGACTCTTtctgcttatttattttctcaggTCCCTTTTTCTGTAGAACTCCAGGTTAACACCATCCTATCTGATGATGACTGTAAAATAAACTATTTCTGTGCCCTTAGCCTCATGCATGACAGATTATGTTCAGATTAAATATGAATGAGAATAGATTCAAGAGAAGTGCTGTTTACATAGAACTTCTAATGGGAGTtcaaatgcatattttatttagaaaacatAAATACGGGTATTGATTAATATAAAACGTGACAATGCTGATGTTAGCAAACCGGCCCTGCTCTGTTAGTCTGTGTGGCCTACTGTGTCAtggctgagctgttgttgctcctggatgcttccatttcacaataatagcgCTCACAGTTGACCGAGGCAGATCTAGCATGGCAGAAATGTCATGAAATTACTTGTGGCAAAAGTGGCATCCTATGATAGTGCCACGTTTAAAGTCAATGAGGTGTTCAGTATGTTTGTTTCAGTGTATTTAGCCATGGCGATTGCATGGCTATGtacttgattttatgcacctaTTAGCATAGGGTGTGGCTGAAACCCGTGACACCTGATCTGATCCAGCTCATGAAGCGCTCATTAGTTCATTAACAAGATGTTGAATGTTGGAAACAGAGGAAGCCTGAAACTGCGTAGAGCAGCAGGTCCATCAGATCAGGCTTGAAGTATGCTCATCTAAGaagtcatttaataataaattataaatgtcaTGAAATGGAGGCAGGTGGATGTACTCACTagcttaattttattaaaagtcaCAGTCAGCAGGCAGAACCATGGTCAAAAACAGGCAATGGTCAAATGATGAGACAAAAAGTACAATTCAGGGCAAAAGCAGATCAAAACACAGGGAAAGCAAAATGTCTAAATGAGAGAAGCAATGGGAAATGACAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50844 lncRNA downstream 47997 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 140319 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 154609 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 358150 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 416201 8493068 ~ 8493304 (-) True G42894
TU50882 lncRNA upstream 91007 9016202 ~ 9017636 (-) True G43029
TU51072 lncRNA upstream 392233 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 457513 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 591516 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 603321 9528516 ~ 9528727 (-) True G43509
XM_026934878.2 mRNA downstream 15727 8868643 ~ 8893778 (-) False ctnnd1
XM_026934894.2 mRNA downstream 15727 8868643 ~ 8893778 (-) False ctnnd1
XM_026934860.2 mRNA downstream 15732 8868643 ~ 8893773 (-) False ctnnd1
XM_026934839.2 mRNA downstream 15732 8868643 ~ 8893773 (-) False ctnnd1
XM_026934886.2 mRNA downstream 15878 8868643 ~ 8893627 (-) False ctnnd1
XM_026934827.2 mRNA upstream 21487 8946682 ~ 8952748 (-) True LOC113539201
XM_026940775.2 mRNA upstream 172792 9097987 ~ 9129058 (-) True pgbd5
XM_026942296.2 mRNA upstream 219060 9144255 ~ 9148708 (-) True agt
XM_026933661.2 mRNA upstream 299681 9224876 ~ 9228793 (-) False sf3b5
XM_026932135.2 mRNA upstream 319346 9244541 ~ 9268345 (-) True oprm1
TU50809 other downstream 55711 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 55711 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 125707 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 439076 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 439448 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 299686 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2783419 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3219700 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3599441 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3606248 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile