RNA id: XM_034303020.1


Basic Information

Item Value
RNA id XM_034303020.1
length 3862
RNA type mRNA
GC content 0.54
exon number 8
gene id sobpa
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32669506 ~ 32710211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAAAAAAAAACGGGGAGGAAACAGGCTCGCGCCGCGTACGGTTACCGAATAACAGGCCCCTCCTCCTTTCCTTTCCcactccgtctctctctctctctctctctctctctctctctctcccctctcagaGCTCGGAGACGCGGCACGCAGCAGCAGAAGATGGCTGAGCGCACCGGGCAGCGCGAGCCCCGCACGGCGGCAGCGTCGTTATCCCCGTCGCTCTCCCTGGGGCGAACCTGAAACCCCCTCCTCctgtttctcctcctcctccaaacaCAAACCCAAACGTTCCCGGTGTCTACACCGTCGCTCCGTGCGTCCGCGAGCCCACCTTGTttctcctgacacacacacacacacacacacacacacacgcacacacacgcgcgcgcgcacacggaggaatttttttttctggttttgttttctttaatcgcagcaTGGCGGAAACGGAGAAGGAGGGCAGCAGAGCTCCGGAGAGCAAGAGGAGCCGGAAACCCGCTCACCCCGTCAAGCGCGAGATCAACGCAGACATGAAGAGTTTTGCGGAGAACACGATGAACGAGCTGCTCGGTTGGTACGGGTACGACAAGGTGGAGCTGCGAGACTCGGACGACATCGAGATCCGCAACTATCCGGACGGGGAAATCCGCCAGCACATCTCCGTCCTGAAAGAAAACTCTTTGCCAAAAGCGGTGATGCCCGAGGGGAGCTCGTCTCCTCCTCATGCCAACAGCTCCTCTTCAACTCCTACATCACGCAATGGCGTCGCCACGGAGACGCCTGCTAAccctgcctcctcctcctcttcctcgaCAACAGTTGCCAAGGAGCAAGGGGGCATGCCAATCATAGTTCCCCTGATTCCACCCCCACTCATCAAACCACCAGCAGaggaGGACATGTGTAACGTTCAGATCGTGTGTGCGTGGTGTCAGAAGGTCGGTTTGAAGCGTTACTCCCTCAGCATGGGCTCTGAACTCAAGAGCTTCTGCAGTGAGAAGTGTTTCGCCGCCTGCCGACGAGCCTACTTCAAACGCAACAAGctgggatatgtgaggACTTTACCTGCCAGAGAGGAGGAGGCCTCCACGCAGCACAGCAAAGACACGCCCAGACTTGTCCTCAAGACACACAGCGATGCGCTTGTGTGTGACTGGTGCAAGCACATCCGCCACACTAAAGAGTATCTGGATTTTGGTTCGGGTGAGAGGCGACTCCAGTTTTGCAGCGCTAAGTGTCTCAACCAGTACAAGATGGACATCTTTTATAAAGAAACCCAGGCGGCTCTGCCTGGTGGACTGTGTAACCCTGTTTATCCGGCCGGAGAcggaaaaacagaaacaaacgcCGGGGTCCAACTTCTGACCCCTGAATCTTGGAACGCACCTTTGAGCGAACTAAGGCCCCGCAAGGCACCATCGCCAGGGCCAACAACATCCGGGGCTGGACACTCGGGATCAGCATCTGCATCACCCTCTGATACCAGCGCCTCAGGTTCAGCATCTTTGTCATCCTCTTCTTCAGTGAAAATCCCCACGCCAAGGCCACACGAGAGTCCAACGttacccccaccaccaccacccctgCCACCACCCCCTGCCCCTGGAATTCACCCTCCAATGGGTCTGGTGCCCAATGGAAGTCCTCCAATGGTGATGACGCCCCGTGGCCCGATGCCTCTGCCCCTCTTTATGGAGCACCAGATGATGCAACAAATCCGCCCTCCCTTCCTCCGCCCTCCTGGCCCCAACAGCCCCCTTCCTAATCCCATGATACCTGGAATTGggccacctcctcctcctcgaaCTTTGGGTCCTCCATCTAGTCCCATGCACCGACCCCTACTTTCACCCCATGTTCACCCCTCTTCCACCCCCACCTTGCCGGGTAACCCTCCCGGAATAATGCCCCCTCATCCAGGGACCCACATTCCTGGACTTCCTTTCCCTCCGGTTAACATCATGCCACCTGGGCCCATACCAGTGCCACCTATGATGAACTTTGGCATGCCATCACTGGCGCCGTTAGTACCACCTCCAATGCTCTTAGTGCCGTATCCCGTAATTGTGCCATTACCAGTACCAATTCCCATCCCTGTTCCTATCCCAATCAGTCCAAAGGCATCAGGTGATCGCCCTGGGAATGATGGGATGCTTCCGGAAGTTTCTGGTGAGCACAGTGACTCGCAGGACTCGTCCTTCTCTCCCAGTTCATCCAGAGGAGAAGGTGGAGCTCATAAGCAAAATTCCTCCAGCTCAGATGTGCTTTCTCCAGGCATTTCCAGCCAGATGGAACGGCACAGTATGAGCTTGATTAAAACAGAAAGTGCTGGAAGTTCCAGTTTATCACATCCAGGATCTCCTACAGAAGCACCAGCAAATGGAATAATTGATTTGACGACAAACCGGCGCTCACGGCAGCAGCTAGTGATCCAGAGAGCCGCGCCATGCGTGCAGGTGAAGCCCGAGCCCGAATCGACCACACCCACTGGGCTTAGCGTGTCAAGAGTGGGTGAATGtgaaatgaatgagagagaTTCCTGCAGCACAGGACCATTAGAGGACACACAAAATGACCGAGACACAGAGGCTAAAAGCCCACTGAACAACATCACTCTGCCTTGTGCTGACCCTTCATTCTGCAGTACTACGCCTTTACTATCTCAACCAATCTCATGCAGCCTTTCCACCCCCCTGGCCAGCATTGCCGTGACAAAAACAGAGCCAGGTACTGCTACGCCTTGTAACGTGATTGTCAATGGCAGCTGCAACATGCAGCCACTAGAACCCACAGTCCGGACACCCCCTCCAGAACAGCGGCCTGCTGTGGAAATGAACCGAAGGACAGCCACAATCTGTGATGAGCCAGCTGAGGGAGAGGACCTGAAGGAAAACAGCTGCTCAGCCATTGAGAGAACCTTATCCGAGCAGGCTGTAGCACCTGGGCGTGCCGGAGAGGAAAAGTCCCAAGAGGCAGAGGACGCTGCATCTGGAGCAGATCATGCATACGCGTTGCCCCTCATGCCTAAACCGGGCTGTGTCATTCAGCCTGTGCCAAAACCAGCAGATAAGACGGCAGCCATATTGCCATGCGGCTTGGAAGCTCCGTTATCGGTGGCGGGAGCAGCAGACATGGAGCCGCCGTTGAAAAGGAGACACTTACATCTCACCAAAGGGACAAGAGCGCAGCACTGCAGCAGATCCCATCAGTCCACCAATCAACATGTCAACACCTGTCTCTACTCCTCCATAACCTTCTCTACAAGCTCAATCATGTCTCGGTTAGATAAATAATTGCACTTCCCACCAATATTATCTCAGAGCAGACTGATCCCAAGGATTTCTTTGAGGGATGAATTTTCGATTGAATCTTTCAACTTCTGACTTTTTATGGTCCTCCGTTTCTCATCACTGTTTAGTAATATTCTATCTACATGGACGTGTCTCCCTCTACAGGACTGGTGCAGCGCTGCAGTGCTAAGGATTGTAATGTATATAAAGAGTTGGGACAGGGCCAAAACATGGGTGATTAAGCCAAAACAGCAATCATGAGAGGTCCAGCGGACTGCCAATGAAACATGCAAAAGGTGGACAGGATCAGCTCCTAAACAGGCCTGGAAGCGGGCCTTAAACATGGCCTTAAACATGAGGCCTGCCACTCAGATGTGCCCACAGATGACAGACAagtattttttgtttagtttcagTGTTCAGACAAGTCTGCTTTTGTCTATGTtaggtgaaagagaaagagctggAGCTCTGGGATGCCAGTGGTGTCACACTTTAGATGGATAGAGTGCCAAGACAGTAATGAAAAAAAGGTCACCGTGGTCACATCTGTTggtgacatctttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66932 lncRNA downstream 5163 32663881 ~ 32664343 (-) True G56834
TU66925 lncRNA downstream 21570 32644692 ~ 32647936 (-) True G56827
TU66735 lncRNA downstream 254046 32414909 ~ 32415460 (-) True G56672
TU66731 lncRNA downstream 269196 32399915 ~ 32400310 (-) True G56668
TU66724 lncRNA downstream 287675 32381127 ~ 32381831 (-) True G56661
TU66958 lncRNA upstream 3518 32713729 ~ 32713933 (-) True G56860
TU67281 lncRNA upstream 19673 32729884 ~ 32775597 (-) True G57126
TU67331 lncRNA upstream 88900 32799111 ~ 32800472 (-) True G57169
TU67378 lncRNA upstream 357323 33067534 ~ 33068685 (-) True G57215
TU67441 lncRNA upstream 524455 33234666 ~ 33235712 (-) True G57267
XM_026939074.2 mRNA downstream 7894 32655116 ~ 32661612 (-) False slc66a3
XM_026939383.2 mRNA downstream 133887 32525404 ~ 32535619 (-) True arg2
XM_026939096.2 mRNA downstream 152872 32509524 ~ 32516634 (-) True rdh12
XM_026939177.2 mRNA downstream 186492 32478301 ~ 32483014 (-) True si:ch211-10a23.2
XM_026939393.2 mRNA downstream 280362 32386260 ~ 32389144 (-) True ndufaf1
XM_026939072.2 mRNA upstream 49460 32759671 ~ 32764344 (-) False mtres1
XM_026939073.2 mRNA upstream 49460 32759671 ~ 32764340 (-) False mtres1
XM_026939071.2 mRNA upstream 49460 32759671 ~ 32764304 (-) True mtres1
XM_026939056.2 mRNA upstream 155034 32865245 ~ 32868355 (-) True rdh14a
XM_026939055.2 mRNA upstream 385445 33095656 ~ 33104243 (-) True osr1
TU66930 other downstream 7944 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 280362 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 280362 32374346 ~ 32389144 (-) False ndufaf1
TU66783 other downstream 315024 32350801 ~ 32354482 (-) False tmem39b
XR_004577843.1 other downstream 379899 32239601 ~ 32289607 (-) False brf1a
TU67278 other upstream 5616 32715827 ~ 32728741 (-) True G57124
TU67373 other upstream 309067 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 630011 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 713458 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 745011 33455222 ~ 33462342 (-) True G57322