RNA id: XM_034303109.1


Basic Information

Item Value
RNA id XM_034303109.1
length 2983
RNA type mRNA
GC content 0.47
exon number 10
gene id zfand4
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18788701 ~ 18807597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGATTACTGCCGACGCCATACGGCTTCCCTGATGTCAATCAAAAAGTGCCAGAATAGACTCCTCCCACCATGTTCACTGGGACAGACCGAAAAATGGTGAAGATGTCCTGAGGAATTAATGCGTAGGCCTCTGTCCAGGATGAGTGTACCCGGGGACGGTGGTGAGATCACAACCCTCACTCCTCCACCTTGGGCAGGTTTCATCCCAGTCTCTTCCTAAAGAATCTCCCCTCTCTACAAACATGGCCGACAAGAGGGAGCCGCCATTTTTCAACGATGATAACCTAGGGGTTGTCAACTACAAACTGCCCTTCTATGAGACCATGGAGCTGTTCATAGAGACTCTGACAGGGACCTGCTTCCAGCTGCGGGTCTCCCCGTTTGAGACGATTGTCTCCGTAAAAGCCAAGATTCAGAGACTGGAAGGTATCCCTGTTGCTCAGCAGCATTTGATCTGGAATAGCTTGGAACTTGATGATGAGTACTGTTTGAATGACTACAGCATTGCAGAAGGTTGCACTCTCAAGCTGGTCCTTGCCATGAGGGGTGGGCCTATCAACACCAAACGAGTGACCATGGAGAACTCAGTAAAAGATACCTCTGACTGCTTGGATTCAAAGAGTGATGAGGTGTGGGAAAAGTCTCTGTCTAATAAACAGGTCACTTTACTGGTGTACAAAGAGGGTGACCAGCTCAACGTCTTCCGAGTTGTGGACCGTGGAGACGGAACTCTGACACCTGTGTCGAAGTCACTAAGCAGTGGTTCAGTGCACAATGTGTAcactgaggaagaggaggagggtgTTAGCATTTCCTCTGCACAGCTGACGCTAGAGAACACTATCACTATGAACAAGATGAAGCTACTCAAAGCCAAGATGGAGAATATGAACCTCAATAAAAAGCCCAAGAAGTCTACCAAGTTGAGAGTGAGGCCTCCGGTTGGTCCACGTCCTTTCTGTGGCTCACTTGGCTCTGCTCGCCACCACCGAATGCTCCGCATCCTTCCTCAGATTGGCCATGCCCCTGCAACACAGCTACCTCTGATTGGTGATCAGCAACAGTCTTCCTCCGAAGCTGGCCCACCTTTCACCTGTCACCCAAGTCCTGCCTCTGGTAGAGTCACTTCCTCACTGACAACTTCTAGCAAATACATACTTCAGGAGGAGGAGCCATGGAATAAGCCCACACCCAGGAATATTAGGCTACCTCCTAAAGTGTCCAGGCTGGATGTGAGTGAGCCAAAGGCTATAACAGACTGTCTGTACCCACCGCTGTCTGTCCTGTCTGGTCTGGAAGCTGAAGacgagacagagatacagagtgaTGGACTAATGCTCCCGGAAGATGGAGTTATGATGGAGGCTTCCAAACCCATTCCGTTTAATAGCCTGCTTCCAGAGCCACTGAGTCTGGATGTTTCTGCTCAGCAGGAGACTAGTCTGGACTCTTTAGGAGCTGTGAACGAACCCATGACTGCAACTCCTCTGCTTTCCCAAGTTGTGGGCTCAGAGTCCATTAGCACATGGTCAGTAGGCACTAAGACACTACAGTCCCAATCTGACAGAGCTGCACTGAACTCGCTACACACTCCTCCGCATGTGCCTCGACCTTTCACAGACACTTTTACCAGGGAAGTGTCTCGCCCCTTCCTCGGCTCTAACAGAGGGCCTACCATTCCACCATGCCCGGCTCCACAGATCCCTCCTTTCCATGCCATCAGAGTGGACTCACCAGTAAAACAGCCAGACAGGGTATGCAAGAGCGAGGCACAGGACCTCACCAATATGGCCAACAACATTTCCAGAGAGCTGTCAGGCTGTGTGAGTAACATCGATGAAAAGCTAGCAAGGCCTTGTGATCTGACCAGATTGTGTGGCACAAATGCCCCCTTGCAAGCCAACATCCATCTGCTACaggaggatctgctacagagaATAGTTCCCCTGCAGCGAGCAGCATACACGCCATCAGGCATCCTGGACTCAACCAGTGGACCCTCCAGTTCAATAAAGAGACTAGGCTCTCTGACATATCACCTCCCTCCTGTGAAGGCCCCCCTGAGCTCAAAGAAGAAGACTTCAAAACACTGCTTCCTATGTGGGAAGAAGACCGGGTTAGCCACCAGCTATGAATGCAGGTGTGGCAACAACTTCTGCTCCACGCACCGCTATGCAGAGACCCACAACTGCACTTACGACTACAAAAGTGCAGGACGCCGCTTCCTACAGAAGTCTAATCCCATCATCAGTGCACCAAAGCTGCCCAAAATATGAAGGCACTATGTAAGAGGGAAGATGATATGCAAATAAAAGCATGATTAAAAGAACAAGAACTAAACCAGCAGTGTGCTTTTATCACCGTGTTTGCTTAAttgcaaggttttttttttactttgcaaaaatgtgaatttgtttcttctctatttttaacttttttgtcTTCACACATAggatggaaaaaatgaaactggCGTGGAAGTGTTGTGAAAAGTTGTGATCACTACAAATTGTAATATGTATAGACATATATGGTATATTTCACTTTGTttcttaaaatgtaaatagctTCATGAGACAAGTCTTTGCAAGATGCACTTTAGTAATAATGACatcacatctttttttctttctctaaattGGTCCATTTTAGGCCTACAGCACTCCACTGAGGACATCACACCAGGTACTGCACATACTCAATATAAAAGATGTGTCTGTTATGGATTCACTTTGAATGGAAGTATGCAAGTTGTACTTTGAGAGCTGTAAACACTACTATGCAGTATGGCCACGTagcatattaataattttgagAAGGGCTTGATAGGCTGATATGAACACAAAGCTGAGTTGCCATCGTGAAGGTTTCTTTTTTgtaccttgatttttttttaattgcacacCACCATGAACAGCTGTTAAAATGTTCAGTATTTATTTGGGAATTAAActaataaactgaaatataaataagatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57364 lncRNA downstream 615519 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA downstream 615519 18170025 ~ 18173182 (-) True G48476
XR_004577851.1 lncRNA downstream 697088 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 703896 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 741815 18037687 ~ 18046886 (-) True G48411
TU57866 lncRNA upstream 36156 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 45916 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 82966 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 120585 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 149560 18957157 ~ 18957459 (-) True G48970
XM_026933547.2 mRNA downstream 2238 18716883 ~ 18786463 (-) True march8
XM_026933521.2 mRNA downstream 2239 18716883 ~ 18786462 (-) False march8
XM_026933513.2 mRNA downstream 2239 18716883 ~ 18786462 (-) False march8
XM_026933529.2 mRNA downstream 43448 18716883 ~ 18745253 (-) False march8
XM_026933538.2 mRNA downstream 43457 18716883 ~ 18745244 (-) False march8
XM_026940107.2 mRNA upstream 2478 18810075 ~ 18828322 (-) False washc2c
XM_026940099.2 mRNA upstream 2478 18810075 ~ 18828322 (-) False washc2c
XM_034302912.1 mRNA upstream 2478 18810075 ~ 18828157 (-) True washc2c
XM_026945920.2 mRNA upstream 23954 18831551 ~ 18837797 (-) True alox5a
XM_026932472.2 mRNA upstream 37555 18845152 ~ 18852107 (-) True slc25a16
TU57664 other downstream 175300 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1127317 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1214279 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1214279 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1312640 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 508890 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 828241 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1550337 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1550391 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1550391 20357988 ~ 20369429 (-) False gng2

Expression Profile