RNA id: XM_034303119.1


Basic Information

Item Value
RNA id XM_034303119.1
length 2008
RNA type mRNA
GC content 0.45
exon number 13
gene id phf10
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23032198 ~ 23049124 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCAGCCGGAGTGGAATCATTGTAATGGTCCGTTAAAATCAAAATGGCAACTCTGCTGTCTCCGAGGCAGTGTGATAGCAATCCTGCAACACCCGGAGCACAGTCTTTAAAGGATGACACGGAGGAGAATTCGAGCGACGGCAGCCAGGCGCCCAAGAGACGCAGAATGGGATCAGGAGACAGTTCGAGGAGCTGCGACACCACCAGCCATGAACCAGGACCGACATATTTTCCTGCTGAGAATCTGACCGAGTACAAATGGCCCCCAGACGATACGGGAGAGTATTATATGTTGCAAGAACAAGTCAGCGAGTATTTAGGAGTCACCTCGTTTAAGCGGAAATATCCAGACCTGGAAAGGAGAGACTTATCTCACAAAGAAAAACTTTATCTTAGAGAGCAGAACGTCATCACAGAGACGCAGTGTACATTAGGGCTTACGGCTTTGCGCAGTGATGAGGTTATTGATCTGATGATTAAGGAGTATCCAGCTAAACATGCAGAGTACTCGGTTATTCTTCAAGAGCGGGAGCGACAGAGGATCACCAAAGAGTACTCAGTAAGCACTCTGAGTGCGCAGCAGCAAAATCCTCAAAAGGTTGAAGCCAGCAAAGTACCAGAGTACATCAAGAAAGCTGCGAAAAAAGCagcagaattcaacagtaacTTCAACAGAGAACGCATGGAGGAAAGAAGAGCCTACTTCGATCTTCAAACCCATATAATTCAGGTACCTCAAGGGAAATACAAAGTCCTCCCACCAGAAAGGACAAAGACTGGGCCCTACCCAGTTGCCCTCATCCCAGGACAGTTCCAGGAATACTACAAAAGGTATTCTCCAAATGAGCTACGCTACCTACCATTAAACACAGCTTTGTATGAACCTCCACTGGACCCTGAACTGCCTGCCCCAGACAGTGATGGTGACTCAGATGATGGTGAAGATGGAAAAGTGGATGACGGCAAGAAGAACAAGGGCTCCTCTGACAGTTCAACAGGAAATACCTCTGATGGAGACAGCCAGGACAGTGGGGTCCAGTCCAAAGGCAAAAGCAAAGACGCCACTCCACGCACCCTCCAACACAAATCTGTTCCTGGGTACAAGCCTAAGGTCATTCCCAATGCTATATGTGGCATATGCCAGAAGGGTAAGGAGTCCAACAAGAAGGGCAAACCAGAGGCACTCATCCACTGCTCTCAATGCCAGAACAGCGGTCACCCGTCCTGCTTGGACATGAGCGCAGAGCTGGTAGCGCTAATAAAGACCTACCCGTGGCAGTGTATGGAGTGTAAGACTTGCACAGTGTGTGAGCAGCCCCATCACGAGGAGGAGATGATGTTCTGTGATAAGTGTGACCGTGGTTTCCACACCTTCTGCGTGGGAATGGACTCCATTCCCTTGGGATGCTGGGTTTGTGATTGCTGCCATAAGGACATTTCATCACCTAAGAAAAAGGTTACTGGCAAAACGCCAAAAAAATCGAAATAagattatgtgaaaaatgtcaacccaggtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatggcaattatttctgttgttttgtaaCTGAAAGACTAAACATGcaatcatttgtgtgtgtgttttctttttctatttcttatttGGTATAGTAATTAACcaatagctgtttttttttttttttttttttaactctttgtaaaataaagtgcaaaatgtcattgttgttgCTCTCCCTTCACTCTGTAGTCAGATATACTGATCTGTTCACTGAATATTATTGCTCATCATGATCGAAAGGTACCAAATggcagaaagaaataaaggaagcAATGAAAGTCTGCAGGTGGTTACCATCTTGTATGCTCTTTCAGAAAGCTGCACTTGGTAACCCCCAGTTTTAAGGCTCTAAGTTAAGCAGTGATGCCTGTAAGATTCTATAATTAAAGGCATTTATGTACGatttctttttgaaaaa

Function

GO: NA

KEGG:

id description
K22197 BAF45A, PHF10; BRG1-associated factor 45A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60769 lncRNA downstream 141691 22890297 ~ 22890507 (-) True G51390
TU60768 lncRNA downstream 141924 22890059 ~ 22890274 (-) True G51389
TU60643 lncRNA downstream 288926 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 424161 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 465671 22565799 ~ 22566527 (-) False LOC113541574
TU60844 lncRNA upstream 21219 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 166724 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 211072 23260196 ~ 23266336 (-) True G51523
TU60957 lncRNA upstream 364556 23413680 ~ 23413941 (-) True G51557
TU60980 lncRNA upstream 408376 23457500 ~ 23457991 (-) True G51577
XM_026937353.2 mRNA downstream 54555 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 54555 22964720 ~ 22977643 (-) True fam120b
XM_026937357.2 mRNA downstream 97337 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 108458 22913819 ~ 22923740 (-) True apmap
XM_034303142.1 mRNA downstream 165755 22826230 ~ 22866443 (-) False LOC113540882
XM_026941612.2 mRNA upstream 623295 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA upstream 623295 23672419 ~ 23679731 (-) False c1d
XM_026942047.2 mRNA upstream 678028 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 678028 23727152 ~ 23750761 (-) True kifc1
XM_034303048.1 mRNA upstream 788815 23837939 ~ 23840860 (-) True mgme1
XR_003404067.2 other downstream 243415 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 243415 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 930815 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1082009 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 1135921 21896184 ~ 21896277 (-) True trnai-uau
TU60979 other upstream 398784 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 968140 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1403995 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1422579 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1633122 24682246 ~ 24735887 (-) False herc4

Expression Profile