RNA id: XM_034303142.1


Basic Information

Item Value
RNA id XM_034303142.1
length 8203
RNA type mRNA
GC content 0.50
exon number 41
gene id LOC113540882
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22826230 ~ 22866443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAGCGGAAGTTAAAGCCATAAGTCTTCACCCAGAAGCGTAGATGGAAATATGGTGAATAAGATTTCTACTGGTAAAACAAATAGCTAAGTTAAGACAACGCTTTCAGGCTGGGCAACGATACATTACCACGGAGAAGAAAATCTCATCGAGTGAGGGAGAAAGTAGTGACGCCGCGGAAGTCGTGTAACACTGGAGCTGTCATGGTGGGCGAGCGGCGCAATGGGAACCTGCTGGTTCAACTTGGTCCAAAACAGCAGGCTTACCCAGAGGAGCTGATCCGTCAGAGACGTACCCATGATGGCCAGACGGAGTACCTGATCCGCTGGAGCCTGCAGGCTGTGGATGATGGCTCCAGCTCAGGCAGCAGTGGGAATGAAGGAGGCAGCAGCAGTAGCGGTAACTCCGGCGTGGGAAGCTCCGGTGGCTGCACTTCaggagagagtaagacagagaaTATCCTGATGTGGATGTCTACTGAGGACGTGTACGCCAACTGCCCTACACTACTGGGAAAGCGACCGCTGCAGGAGGAGAAGGCGAGACCCAGTGGCCAGTTCCCCTCCGACGTCACCTTCGATGAAGTGGATCTCTGCGACATGAAGGAAGACGTCAAAAACCTTGTTGAGCGAGCACGGAAGCAGATGGCCAAAAACAGCGATTTTGCCATtagcctcacacacaccattcacgTTCTGAGCGCTTATGCAAGCATTGGCTCGCTGGTGGGAGTCTTCAAGGAGACCGGGGCACTAGACCTGCTCATGGAGCTGCTGGGAAACAAAGAGCGACAGACCCGCCGCAGTGCTGGCAAGATGCTGCGTGCTCTGGCCTCTCACGATGCAGGAAGTCGTGCCTACGTACTGCTGTCCCTAAGCCAGCAGGATGGCATTGAGCAGCACATGGACTTTGACAACCGCTACACCCTACTGGAGCTATTTGCAGAGACCACATCTTCAGAGGAGCATGGGATCTCTTTCGAGGGAATTCACCTCCCACAAATCCCAGGCAAGCTGCTCTTTTCTCTGGTGAAGCGCTACCTGTGTGTGACCTCACTAATGGACAAGCTCAACACCACAGGGGGGGAGTTGAGCTCAGAGCGGCAGGATCCTGGCCCCTCCTCTTCCACAGCACATCAATCAGAGCAATCGCGGCTGCAGAGGGAGTTTGAATTCACCATGGCGATGGCAAACCTCATCTCAGAGCTGGTAAGAGTAATGGGCTGGGACCGTAACCGCCAGCCACCCGTCGCATCTCCCACAACAGCCGGGGGATCAGAAGAGACCGAGGCAGAGGTGAACAGGCGCACCCTACGTTCCATCTTCCAGCCCCGTTTTTCTGCCTCTCCTGTTATAACAGCATCAGCAACAGCAGCACCTGCTCCACCCAAGAAGAAGACAAATGGCTTCAGGACCCGCACAGACTTCTCCACACGTTCAGCCTATGTGGAGTATGTGCAGGACACTCTGAAGAGCGGCATGCAGGTGCGCATGCTGGAGGACTATGAGGAAGTCAATGCCGGTGATGAGGGAGAGTTTCGCTACAGTAATGATGGCTCACCACCTGTCCAGGTATACTGGAACTCAATCTCCAGAACATACTGGGTGCACTGGCACATGATTGAGATCCTGGGTAATGGGAGCAGTGGACAAGCTGAGAAGGAAACTCAGGAAAAGGCTTTTTCTCTAACCGAGACACTTAAACTTTCTGCAGTGAATCAGATGTTCTTCTTGAAGCCACCTGGTGGGTTGTACTCACTACCTTATCTAACAGACAGCCTGCAGGATGATGCAGACACCCTTACCCGTGCTGAATGGTGGGAGGTGCTTTTCTTCATTAAGAAGCTAGAGCCAAAGCAGCAACAAGAGATCAACAACATTCTTCGACAGAATCTTGATGAACAGATGGTGGAGCTGGATGAGGCCACTTTAATTCAGTTGTCAGTGTCAAGCGAGGTTGCCCGTAAGATCCTGCACTACCTGAAACAGACCCTGCAGGCCTCTTGCCTGGGTGACCTGCTCTGTTCGCATGCCTTTGTTAAGCACTACTTGCGCCGTGGTGGAGCCAGtctggaggatgaggaggtgtTCACTGACAGCTCCCTCAACTCCTCTGGGCTTGGTGGACAGGGAGCCTCATCGTCTTCATCAGTGACATCTAAAGCTTCTACCTCTGCTGCATCCTTCTCCATAAATGGCTGTGTTTCTAAGAAACCCAAAAAAGAGATTCCTGTGGATAATGGCAGCTGTAACAGCGATACAGAGAGTGAGCTACCAACAGAAGATGAAACTAAGTATCCTGAAGATCTGGAGGAAAAGATGAAAGTGTTTAATAACCCAAAAGTGCAAGGTAAGAAAACAGCCTTGGAAAAAATCGGAGAGGTCGTGGACATTATGAAAAAGAGTAGCTCTGACTCGGGACATCTGCTGGCTGGCATGAAGTTCATCTGTAAGATCCTGGAAGAAGAGGGGCCTCAGGAGCGCAGCAGTCTTAGATCAGACTCAGCACAGAGCATCCGGGACAAAGTCTTAAAGATACTGGTTGAGATGGTTGGTAGCCAACCAAAACAAAATGCCATCATGGCCTTGCTTCTAACCCGCAGCCTAATGCTCAAATATGAGTGGCGGGTTTCCTTCGCTACAGAGGGCGGCGTGAAAGCCATTTTGTCCTGCATGCAGGAGTATCCCACCTGCACACGAGTGCAGCAGATTGCACTAGCCACCTTGAAAGTCATCACTGGTGCCAGTAAGCATGACCTGCGCAGTGTGGGAAGCTGTCTGCCCCTCTCTGAATCTGGTACTCAGATGATGCTGGAGATTTTTGCAAGCATTGGCTCAGCAACACCTGAAGGCTCAAAGGGGCTTCTTGGAGCAATTCCATCTGCTATTGATCTCATGCTCAACAGCCCTGGTGGTGGCCTGTCTGTACGAAATGGCCTGTTGGTGATAATCATGCTGATCTCCAATCACAAGAGCCTAGCAGAGCAACTGGTGGCCTGTGACATCACCACTGTACTCAGAAAGTGCCTTTCTGGTCACAGCTCTGAAAGCATGCTGGCATTAATTGCCCTCAGCCACATCTCCAATGTTCACAAACTGGAAAAGAAAGAGTCTAAGGAGGAGCTTGACTTCAAGGAcacagagctgaagatgttaGTTGTAGGTCTAAAGGAGATGACTACCACCAAAGAGGTGATCCAGACCCTGGAACAACTGCTGTGTGATGAAACTTCTCAGCTGGAGGATGAGAGGAACGAGGTGATGCATAGCAGAGACACTTTTCAGGACCTGGTGCGCCTCATGGACCAGCACAGAGTGGAGCGCACAGTGCAGCTCTCCATTCTCAGAATCCTGAACAAGTTCTTGGACAATTATCAGGAGGATTTGCTACCTTGGCATGAGAGCATTGAACCTTCCCTCTCTTCTATGACAGCCTGTATTAATGACAGAGAGGCTGTGCAGCAGTTCATCCGTTTCCTATATCGACTGGCTTCTCTGAACAAAGACTATGCTGTAGTTATGTGTCGTCTAGGCACTAGGGAAGCACTCGTCAAAGCTTTGGACAAGCATAGCACCAACCTGCTACTGGTCACAGAGCTACGTGACCTCATTAACGATTGTGAAAAGTATGCCAGCCTTTACAAGAAGATGACCACCAGTGTGTTAGCTGGATGCATACAGATGGTCTTGGGCCAGATTGAGGAACATCGACGCAATCATCAGCCCATTAACATCCCTTTCTTTGACGTGTTCTTGCGCAACTTGTGCCAAGGTTCCAGTGTGGAGCTGAAAGAGGATAAATGCTGGGAGAAAGTGGAAGTCTCCTCTAACCATCACCGAGCTAACAAGTTAACTGACAAGAATCCCAAGACATTCTGGGAATCCAACGGTTGCACAGGCTCTCATTTTATCAATATTTACATGCACAAGGGGGTAGTCATTAgGCAACTGGCAGTCCTGGTAGCCAGTGAAGATTCAAGTTACATGCCAGCACGTATAGTAGTACTGGGAGGAGATGATCCCACAAACATCAATACTGAGCTCAATACTGTAAATGTGCCACCGTCTGCTAGCCGTGTTGTTCTGCTGGAGAATATGACCCGCTTCTGGTCCATAATTCAGATCAGGATAAAGAGGTGTCAACAGGGAGGTATTGATACTCGAGTGCATGGCTTTGAAATTCTGGGGCCAAAGCCAACATTCTGGCCAGTGTTCAAGGAGCAGCTGTGCTGCCGTACCTACCTCTTCTACACAACCAAGGCTCATACCTGGTGCCAGGAGATCCTAGGGGACAGGAGCCAGCTGCTGCAGCTTTTCAATAAGTTGAACAGTGCTCTACGTCATGAACAAATGTTTGCTGATCGTTTCCTGCCTGATGCTGAGGCTGCAGAGGCTCTTGGCCGTACTTGCTGGGAGGCTCTAATCACTCCTATTGTACAGAGCATCACTCTCTCTGagagcCATGTTCTGAGTCCACTGGCCTGGTTGCTTAGTGAGTACTTGGAGAATTCAGAATCTTCAAAATGCTATAAGAGCAGGGCTGCCATCTTTAACTCCCGTGTGCGTCGCCTCACCCACTTACTGGTTCATGTGGACACCAGCCGAGTGGATATAGAAGAACTCAAACCTCCTGTCAAATCCAATGGTAAAGAAGGAAAGAACAAGGAAACATCTGGAGTgacctcttcctcttcctcatctgcTGCTAAGCCCAAAGTGAAGAACACCAGCAGCATTGCTGGCATTGCTCTTTGCTGGCAGGGTGTCGTACAACGACAGgtgAAGAAGTTTCTTGATTTAACGTACAGTCTTCCAGACTTTGTGGAGCGCTACAAGAATATGTACGTGCGCCTGAAGAATGCCATGGAGGAGCTTTTTGGCCAGCAAACAGCCTTTGTGCTGGCACTACGCCAGGGGTTTTCTGCAGCACTGTTGCAGCTCTCCATCCTTACTGCCATGCATGTGAGTGAACGGTTTGCTCAGTACATAGACCACATGATCCAAGAGAGCGGAGTGGATACTGGGAATGTGGAGACCCTAAACAAGCTGCAACAGTTCCTGGAGCCCATGCTCTTCCTCTCAGGACTAGAGCTGGCCAACACATTTGAGCACTTTTACAGGTATTACCTGGGGGATCGTCTGCTGAGCCAGGGGAAGGTGTGGCTCGAGAGTGCAGTAATTGAACAGATTGGTACCTGTTTTCCTGAACGTTTTCCCCAGCAGATGCTGAGCAACCTGAGTGAGTCGGATGAACTGCAGCAGGAATTTCACCTGTACCGGCTGCAGCAGCTGGACAAGAGTCTGCAGGAAATGGATGAGGAGATGATGGATGAGCAGATGTCAGAGCCGGAAGACGACTGCGAGGTAAAGGTGCTGGTTTTATCGCCACGCTGCTGGGCTGTTTCTGCTCCCTGCTACCTGGAGAATCCCATCAAATATTTTCCCCAAAAGCTCTGCAGCTACCTGGACGAGTTCACCGACTTCTATTCCAACAGTCAGTGCATGTACCAACTTAGCAACAGTAAGCCACGGCGATTGCAGTGGACCTGGCTTGGCCATGCAGAACTGTGTTACGGCTCCTGCACGTTATACGTCTCCACACTGCAGATGTACATCCTGCTTCAGTTCAATCACCAAGAGGAAGTAAGTGTGGAGGCTCTACAGCAGGCGACTGGCCTGTCCCCACCTGTACTGGTACATGCTCTCACACCTTTGATCTCAGAGAAGGGCATTCTGACTCATGAAGGCTTCAATCAGGATCTTCAGAAGGGGGTTCTCAGGTTGAATAAGATGTCCTTGGCACAGAGCTCAGAGAAGCAAAGGTATTGCTATCTACTGCCAAAACAGACCTACCTGAATGTGGATGAAGATGCAGCCCTCACTCTGGAGAGGAAACGGAACCATATGTACTGCCTTATTGTACAGATCATGAAGAACGAGAAGGAGATGCATATAGACAACTTGGTGTTCAAGGTGTTGGACACTTGTCAAAAGCAGGAGGCTGCTCGCTCTTCCAGCACTGTGCGGTTTAGCTGCAGCACCACGGATGTACTATCCTGCATCATGCACATCATCAACAAGGGCTACATCCGCCGCAATGAGGACAACCCCCACATTGTGGAATTTCTGGTAGAAGACCCATCCACTCCCCAGAAGAGCCAGGCGCACTTCTTCAGCAAGCTGGACCTGAACAAGAGCACAGGCAGCACCAAAGCTGACACCAGCCTGGGAGGCCCTATTATGGCCCCTCAGCGGGTGGAGGATGGGGCGTTGGAGTCTGTGCTCTTCTCCATGGGTCGCACTATGACCCAGGAGGAGGTGAAGCATCTCATGCGGCGCACCATCCAGCAGTTGGCTGACACCCTCAGCTTGGAAGAGGAGCCAGCTGAGCACCTGCTCATGCACTGCAAGTGGAACATTGACATGTTGATCCAGCGCTACACAGATGATCCAGAGGCACTGGTGCTGGCTGCCGGCCTCAAGATCCGCAACCCTCAACCTCCCCCTAGTCCCATGAGTCTCTGCCCTGTGTGTCTTGTGTCCCGGTCTGGGGACAGTGACTCTGAGCCCATGATGCTCAGTTGCAGGCACTACTGCTGCAGGTCTTGCTGGCAGGAGTACCTGACTGCCCGGATTGAACAGAACCTGGTGATGAACTGCAACTGTCCTATCACAGACTGTCCTGCTCAGCCCACTTCTAAGTTCTTCTATAGCATTCTGACTGACAAGGATACCATTGCAAAGTATGAGAATGCACTCCTACGGGGCTATGTTGAGTGCTGCTCCAACTTGACCTGGTGCACCAACCCTCAGGGCTGTGACCAGATCCTCTGCAAGGAGAACATTGGCAGCATGGGCACCTGCTCCAAGTGCTGCTGGTCTTCCTGCTTCAGCTGTAACTTCCCTGAGGCTCACTATCCAGCCAGCTGCAGTCACATGTCCCAGTGGATGGATGATGGTGGCTACTATGAGGGAATGAGCATGGAGGCCCAAAGTAAGCATTTGGCCAAACTCATCTCCAAGCGCTGCCCCAGCTGCCAGGCACAGATAGAGAAAAATGAAGGCTGCCTGCATATGACCTGTGCCAAATGTAACCATGGATTTTGCTGGAGATGTCTTAAGCCCTGGAAACCTACTCATAAAGATTATTACAACTGTTCAGCCATGGTCAGCAAAGCTGCACGGCAAGAGAAAAAGTTCCAGGACTATAATGAGAGGTGTACTTTCCATAACCAGGCCAAGGACTTTGCAATCAATCTGGAAAACAAAGTGTCTTCCATCAATGAAGCCTTGCAGATGAAGTCTTTGACATTTGTTATTGATGCTTGCAAGATTCTTGCCCAAGGTCGAAAGGTGCTGGCCTACTCATGTGTGTACAGCTATTACAACCAGGACACAGAGAAAATGGATGTCATGGAGCAACAGACTGAAGCCCTGGACCTTCACACTAATGCTTTGCAGATCTTGCTTGAGGAGACACTGTTGCAGTGCACAGACTTGGCATCTTGTGTGCGACTGCTGAAGCCAGAGCACCTTAACACTGGCCTAGAGCTTATTCGCCGCATCCAGGAGCGTCTGGTGGCAATCCTGCAGCACTCTACCCAGgaCTTCCGTGTAGGATATCAGTCCAAGACTGGGCCAGATCACGAGGCTGCACAAGCCTTAAATGTTGCTAACAACACAGAAAAGAGCAAAGAGACCAAATCAGATAGAGGctctgagactggagactctgACAACAACAATAACTACAATGAAGATGGGGGTGATGAGGCCGAGGAGGATGATGAGTATGATGATGAGTATGTCCCAGAATGGCACGAAGACTATGATGAGGAAGAAATTGACGAGGACGACTTTTtctctgatgatgatgaatctGAGAACCTAGAGAGGGACTTTGTTCCTTATGactgaattaaaaattaatgacCAGTCACTGTGCCTAGAAAGGAGGAAAGTATGTGGATTGCATCAGCTTCAGTTCTGGAGGTCTCCCTGTGCTGTATAGATCAGTGTTTTCCCTCATGTAACATACATATTCAGTAATTCAACAGGGATGTGTAACAGTGGAGAAAGCAGGAAAATGTGCAGAGCAGCAGAACCCTTGTGACTGAAAACACTGGTCTAAAAATAGTAAGCAATCACTcgcaacataaaaaaaatgttggtggATGAAAAAGcacttaaagtaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60643 lncRNA downstream 82958 22647350 ~ 22743272 (-) True G51289
TU60626 lncRNA downstream 218193 22605547 ~ 22608037 (-) True G51276
TU60484 lncRNA downstream 259703 22565799 ~ 22566527 (-) False LOC113541574
TU60485 lncRNA downstream 279740 22544227 ~ 22546490 (-) True G51169
XR_004577858.1 lncRNA downstream 648899 22165739 ~ 22177331 (-) True LOC117596869
TU60768 lncRNA upstream 23616 22890059 ~ 22890274 (-) True G51389
TU60769 lncRNA upstream 23854 22890297 ~ 22890507 (-) True G51390
TU60844 lncRNA upstream 203900 23070343 ~ 23070721 (-) True G51462
XR_003403951.2 lncRNA upstream 349405 23215848 ~ 23218757 (-) True LOC113539667
TU60916 lncRNA upstream 393753 23260196 ~ 23266336 (-) True G51523
XM_034302693.1 mRNA downstream 11282 22791183 ~ 22814948 (-) False si:dkeyp-121d4.3
XM_034302692.1 mRNA downstream 11283 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
XM_026937266.2 mRNA downstream 11283 22791646 ~ 22814947 (-) False si:dkeyp-121d4.3
XM_026937258.2 mRNA downstream 11283 22791646 ~ 22814947 (-) True si:dkeyp-121d4.3
XM_026937279.2 mRNA downstream 37426 22774355 ~ 22788804 (-) True znf318
XM_026937407.2 mRNA upstream 47376 22913819 ~ 22923740 (-) True apmap
XM_026937357.2 mRNA upstream 61202 22927645 ~ 22934861 (-) True ppm1g
XM_026937353.2 mRNA upstream 98277 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA upstream 98277 22964720 ~ 22977643 (-) True fam120b
XM_034303119.1 mRNA upstream 165755 23032198 ~ 23049124 (-) True phf10
XR_003404067.2 other downstream 37447 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 37447 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 724847 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 876041 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 929953 21896184 ~ 21896277 (-) True trnai-uau
TU60979 other upstream 581465 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1150821 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 1586676 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1605260 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1815803 24682246 ~ 24735887 (-) False herc4

Expression Profile