RNA id: XM_034303144.1


Basic Information

Item Value
RNA id XM_034303144.1
length 1359
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC117596909
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 130641 ~ 137230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACATCTGGTTCAGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGAATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAACCAGACTTTTGTTCAACTTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGAATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGAATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCCACGTAAGTTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45325 lncRNA upstream 6004 124380 ~ 124637 (+) True G38293
TU45311 lncRNA upstream 17517 112765 ~ 113124 (+) True G38279
TU45310 lncRNA upstream 17972 112426 ~ 112669 (+) True G38278
TU45306 lncRNA upstream 20468 109958 ~ 110173 (+) True G38274
XR_004577591.1 lncRNA downstream 98 137328 ~ 137848 (+) True LOC117596477
XR_004577903.1 lncRNA downstream 3019 140249 ~ 142236 (+) True LOC117596908
TU45368 lncRNA downstream 132090 269320 ~ 275049 (+) True G38317
TU45374 lncRNA downstream 178099 315329 ~ 315671 (+) True G38322
TU45375 lncRNA downstream 182586 319816 ~ 320020 (+) True G38323
XM_026911080.2 mRNA upstream 66095 46540 ~ 64546 (+) False pdcd4a
XM_034303145.1 mRNA downstream 5122 142352 ~ 153475 (+) True LOC117596910
XM_034303146.1 mRNA downstream 16586 153816 ~ 165514 (+) True LOC117596911
XM_034302586.1 mRNA downstream 63371 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 63371 200601 ~ 213729 (+) False LOC113524725
XM_034303148.1 mRNA downstream 214180 351410 ~ 356704 (+) True LOC117596913
TU45347 other downstream 64549 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 70229 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 551884 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 584897 722127 ~ 744984 (+) False mtap
TU45707 other downstream 926742 1063972 ~ 1065331 (+) True G38577

Expression Profile