RNA id: XM_034303145.1


Basic Information

Item Value
RNA id XM_034303145.1
length 2360
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC117596910
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 142352 ~ 153475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGTATATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGAATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGCGTCATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCGGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCACATACGAGAATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCAACTTACGTGAAGTTGAAAGCAGCACTGATTTCTGTTCCGAGAATGCTTACTGTACCGCTTACTGCACAGTCCTTGATATTTCAGACACCTCCTATGCAGTCATCTTCACAATCAACATCAGTAACCTCAGCATGCCAGAGAACCCTGAACGCAGGAACAACACCTACAACCAAGTGGAGAACTCCATCAATAAtgctgtgagtgtacatgttGAATGCACTTTGTGTTGGCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577903.1 lncRNA upstream 116 140249 ~ 142236 (+) True LOC117596908
XR_004577591.1 lncRNA upstream 4504 137328 ~ 137848 (+) True LOC117596477
TU45325 lncRNA upstream 17715 124380 ~ 124637 (+) True G38293
TU45311 lncRNA upstream 29228 112765 ~ 113124 (+) True G38279
TU45310 lncRNA upstream 29683 112426 ~ 112669 (+) True G38278
TU45368 lncRNA downstream 115845 269320 ~ 275049 (+) True G38317
TU45374 lncRNA downstream 161854 315329 ~ 315671 (+) True G38322
TU45375 lncRNA downstream 166341 319816 ~ 320020 (+) True G38323
TU45376 lncRNA downstream 185341 338816 ~ 339897 (+) True G38324
XR_004577801.1 lncRNA downstream 469880 623355 ~ 624398 (+) True LOC117596828
XM_034303144.1 mRNA upstream 5122 130641 ~ 137230 (+) True LOC117596909
XM_026911080.2 mRNA upstream 77806 46540 ~ 64546 (+) False pdcd4a
XM_034303146.1 mRNA downstream 341 153816 ~ 165514 (+) True LOC117596911
XM_034302586.1 mRNA downstream 47126 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 47126 200601 ~ 213729 (+) False LOC113524725
XM_034303148.1 mRNA downstream 197935 351410 ~ 356704 (+) True LOC117596913
XM_034302591.1 mRNA downstream 202613 356088 ~ 360872 (+) True LOC117596826
TU45347 other downstream 48304 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 53984 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 535639 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 568652 722127 ~ 744984 (+) False mtap
TU45707 other downstream 910497 1063972 ~ 1065331 (+) True G38577

Expression Profile