RNA id: XM_034303146.1


Basic Information

Item Value
RNA id XM_034303146.1
length 1961
RNA type mRNA
GC content 0.39
exon number 14
gene id LOC117596911
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 153816 ~ 165514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTCGATTTGGAGGAGCAGTGGTTCTACCCCAAGCTTTGTCCACcaactgagctcctgcttcacaaCCACAGACTGctaaacacacttctcAATGCACCGGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTTGTCGTCTCCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATATGCAAACCTCAGTGATTCAGTAAATGTGCTGAATTTCACATACGAGaATATTTCAGTCACTTCCTGTGCAGTCATCTTCACAATCAACATCAGTTACATCCCTATGCCAGAGAATCCTGAATTCAGGAATGACACCTACAACCAAGTGGAGAGAATCATCAATAacgctcTTACCATAATCCTGGCTGATCCAGTGAATTCTACTTTGCATCCACAAAAAACCAACTTCATGAGCATATTTAATCAGATTGTCGGGGAAATGCTGTACAATTTCCAAGGGGAAAACATTACAAAACTAACCAACTTGCTCaatgttttaaatgcatatgGTTTGACACCAACCACCTCTGTGCAGAGCACTTCACCTCCATCTCTACTGGGGACTGTGGTGATTTATCTCCGTCTAGTGTTTAAGAACTTGACAAATGTACCGAGTGAGGCTGATGTTATCAAAGCTGCCAATACCCTGCTGGACTCCAGTGTCAGATTAGCACGAGATACAGAAACAGTAAGAGTGTATAATCCTGTCAGCATACAGAATGTCACCTATCAGAAATTCGGCAACAACTCGTACATTATTAGCTTTGGATTTGAAATTAACAATGTGAGCTTCTCTATGAACACTGAACTACGGAACAAAACATATGATTTAATCCAAGACACCATCAATGGCCTGcTTAACAGAATTCTGAATTCCCCAAATTCTAAACCATTTATCTTCCCAAGAGCAAACTATATGAGTAACTCTACCATGATTGTGGCTGATTCAGAATACGTCTTTTCGGAAAGTGATCTCAGTTTTGTACCAAGTGGATTTCTTACTCAGATACTCATAGTTAGTGGACTGAGTGACCCATCTCCTCTCACCGCAGCACCCACAACCTCTGGGATTGAATTGCTGCTGACCCCCAATGAGGAAGGGCTTCCAGGATGGGCACTGGCCATCATTATCCCCTGTAGTATAGCCATTATTCTCATACCATGCTGGATTCTACTCTGTTGTCTGCTGTGTGGCTGCTGTGCTGCCTTAAGGAGACGTTACAGTCGAAGAAGGTCTTACAATGTCCAATACACAACACGGAATGGACTCTTTTGAAAACAGACTGAAAGCAAACATGGTTCCTccctaaaaaaatgaaaaaaaaagttttaaatatataatttgataaaaagaaaataatataatttatatatttaactgaTTCATACtttccattttaattaattatttctatGCCACAAAATCAATACATTTCTCAAATCTTCATAAGAAGATAGTATCTGAAAAGATATATTGCTCTAAGTTGAAGTGAATGGAATGTTGAATGCAGCAGTGAATAATActttcaatttaaatttaatttattctttaaattaatGTCTTGTAAGTAAGtgtaatcaaataaaaactatatttagtcattttttttcatcatcctGACCAGGCATTTACAATGTAACCCAAAGATCTGGGCAGTGTGCTTCACAATCATACACAACACAACAGGCTGCATGAAATTTTCTCTTGTATACAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577903.1 lncRNA upstream 11580 140249 ~ 142236 (+) True LOC117596908
XR_004577591.1 lncRNA upstream 15968 137328 ~ 137848 (+) True LOC117596477
TU45325 lncRNA upstream 29179 124380 ~ 124637 (+) True G38293
TU45311 lncRNA upstream 40692 112765 ~ 113124 (+) True G38279
TU45310 lncRNA upstream 41147 112426 ~ 112669 (+) True G38278
TU45368 lncRNA downstream 103806 269320 ~ 275049 (+) True G38317
TU45374 lncRNA downstream 149815 315329 ~ 315671 (+) True G38322
TU45375 lncRNA downstream 154302 319816 ~ 320020 (+) True G38323
TU45376 lncRNA downstream 173302 338816 ~ 339897 (+) True G38324
XR_004577801.1 lncRNA downstream 457841 623355 ~ 624398 (+) True LOC117596828
XM_034303145.1 mRNA upstream 341 142352 ~ 153475 (+) True LOC117596910
XM_034303144.1 mRNA upstream 16586 130641 ~ 137230 (+) True LOC117596909
XM_026911082.2 mRNA upstream 89270 46985 ~ 64546 (+) True pdcd4a
XM_034302586.1 mRNA downstream 35087 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 35087 200601 ~ 213729 (+) False LOC113524725
XM_034303148.1 mRNA downstream 185896 351410 ~ 356704 (+) True LOC117596913
XM_034302591.1 mRNA downstream 190574 356088 ~ 360872 (+) True LOC117596826
XM_034302589.1 mRNA downstream 195442 360956 ~ 370724 (+) True LOC113525489
TU45347 other downstream 36265 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 41945 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 523600 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 556613 722127 ~ 744984 (+) False mtap
TU45707 other downstream 898458 1063972 ~ 1065331 (+) True G38577

Expression Profile