RNA id: XM_034303149.1


Basic Information

Item Value
RNA id XM_034303149.1
length 2304
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC117596915
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 418514 ~ 426890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctacaacagcagaaacaacatcacTGACAACTACTAccactccaacaagtacaagtcaggaaccagccactacagaggaaacaatcTCGGCTGTAATTGTACGATcaaccacaaaaccaacatcagaattgaccactacaacagtatacacaacacaaagtccaacaaccacaacaccaacaacatcagaaacaacTGGACCTACATTGACTaccactctaacaagtacaattcaggaaccaacaactacagaggaaacagCAACCACTCCAACTTTGCCATCCACTACTACAACAGCAAGAGAAtttaccactacaactatatacataacacaAGTTACAAAAACTACAGCACCAGCAACATCAGAAACAACAGCTTctacaactactacaactaatGCAAGTACAATTCAGAAACCTGAAACTACAGACACAACTCCATCAGCCACAATTAAAACTGTACGTTCAACTACAACGGCAACAGAATTGACCAATTACATTGTAACCACTACAAAGTCTGGAACAACCACGGAAACCACTGTTCCTTCAACAACAACTGATGAACAAAGCACAGATGTAATCACTAGAAATGTAGCTGAAACCACTCCAATTTCATTCGCAACTACACCTACATTTGCCACACTGTCAAGCACTACAAACCTACTAATTGCAGCTTCTCCTGCAACACCCTCAGTAATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCAGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTCACAttcaacatcagtaacatcagcatGCCAGAGAGCCCTGAGCTCAGGAATGACACCTACAAGCAAGTGAAGAGCATCATCAACAACGCTCTAAACACTCTTCTAAATGAAGCCGGTGCAGAACCATTTGAACCTCAGAGCTCTTTCTTCATGAGTTCAGAAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTCAACAGGCTCATGATACAGAATGTGTCGTCTACAACGGCTTCTCCAGCAACTACAAGATATGTCGCTTTGACGTCAGTAGCAACTCCATCAATAGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAgttcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAATTCGGTCTCTTCTGAGTGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaGAATTTCAAACACCTCCTATGCAGTCATCTTCACATGGAACGTCAGGAACATGAGCATGGCAAAGAACCCAAACCTCAGGAATGACACCTACAAGCAAGTGTCGAGCATCATCAACAACGCTctaAACAAACTTCTTAATAAACCTGGTGCAGAATCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCATTTCAAAGATGGAGACACCAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCACAGAGCACACCTGTATTGGGGAATGTCCTGATATACATTCGTCTAGTTTTTAAGAACTTGTCCAGAGTACCTAGTGAGGCTGAGGTTCTCAAAGCTGCAAATGCTCTGCTGGATGCAAAGATCAGAAGAGCACGAGATCTTACAACACAAAAACTGAACGACCCTGTGAGCATACAGAATGTCACCTATCAGAAAATTGACAACAACTCATACATTATCAGCTTTGGATTCCAAATCAGTGATGTGACCATCTCCAAAGACATTCAGCTGAGGAATGAAACATATGATTTAATCCAAAACACCATCAACAGCCTGCTGAACACTATTCTGAATGATAAACCTGCTACTCCATTTGTCTTCCCACGAGCAAACTACACgTTTAATGGTACAGTCGTAGTGGCTGATTCAGAATACATCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTTCTGCAATACTCAACTTTAGCGGCCTGTTGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAGCACACAACACCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45376 lncRNA upstream 78617 338816 ~ 339897 (+) True G38324
TU45375 lncRNA upstream 98494 319816 ~ 320020 (+) True G38323
TU45374 lncRNA upstream 102843 315329 ~ 315671 (+) True G38322
TU45368 lncRNA upstream 143465 269320 ~ 275049 (+) True G38317
XR_004577903.1 lncRNA upstream 276278 140249 ~ 142236 (+) True LOC117596908
XR_004577801.1 lncRNA downstream 196465 623355 ~ 624398 (+) True LOC117596828
TU45414 lncRNA downstream 261780 688670 ~ 699198 (+) True G38361
TU45418 lncRNA downstream 261780 688670 ~ 699198 (+) False G38361
XR_004577806.1 lncRNA downstream 263995 690885 ~ 693150 (+) True LOC117596830
TU45580 lncRNA downstream 283445 710335 ~ 710574 (+) True G38481
XM_034302589.1 mRNA upstream 47790 360956 ~ 370724 (+) True LOC113525489
XM_034302590.1 mRNA upstream 47790 364203 ~ 370724 (+) False LOC113525489
XM_034302591.1 mRNA upstream 57642 356088 ~ 360872 (+) True LOC117596826
XM_034303148.1 mRNA upstream 61810 351410 ~ 356704 (+) True LOC117596913
XM_034302586.1 mRNA upstream 204785 200601 ~ 213729 (+) True LOC113524725
XM_034303150.1 mRNA downstream 23704 450594 ~ 464059 (+) True LOC113525486
XM_034302588.1 mRNA downstream 198203 625093 ~ 632530 (+) True LOC113525482
XM_034303153.1 mRNA downstream 242997 669887 ~ 688786 (+) True LOC113525487
XM_034303156.1 mRNA downstream 271287 698177 ~ 702567 (+) True LOC113525488
XM_034303157.1 mRNA downstream 313205 740095 ~ 744999 (+) True mtap
TU45362 other upstream 209616 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 212844 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 262224 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 295237 722127 ~ 744984 (+) False mtap
TU45707 other downstream 637082 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 675930 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 739150 1166040 ~ 1168639 (+) False trmo

Expression Profile