RNA id: XM_034303155.1


Basic Information

Item Value
RNA id XM_034303155.1
length 2209
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC113541870
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31519040 ~ 31524900 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCTTCACCCGTGAATGCTTTCAGCGCTCTGTTCAACCAGGTCAAGATTTACATTTAGAAGACAGggaTCTGGGATGATGTTTACCACACCTAAAATACAACAGCTTTGCCTGGTATTGACTTGTTGGCTTGGAGGACTATTCTCTtgcttgttgttttttcagtatTCCTCACCATCATGTGCACCTCAACACATTCCTTCTTATCAGCCCGACGTTTACAAGAACTTAACCATCAATCCCACTTCTGCTGCAACTCAGGCTAAGGAGGAAAAGCCCATCCTTCTGCTGTGGTTCTGGCCTGAAAACTACAAGTGGGACTTTCGTGACTGTAAAACCATATACAACATCGACGGCTGCCATTTGACTGATGACAGAAACCTTTACAACCAAGCAGACGCAGTCCTCATTTTCCACAAAGCTATCAAATGGGATCTGTCTAACCTTCCACCTTCTCCTCGGCCTCCATTTCAGAAATGGATCTGGCTTCATGTAGAATCGCCGACCAACACGCCAAAGATACCAGGTTTGGAGAACCTTTTCAACCTCACGCTGAGCTACAGACGGGATGCAGACATTTCTGTGAGATATCGACTCACTGTCAGCAAAAAGCCTAATGAGGACTTCGTGATCCCAAAGAAGGACAAGCTCCTCTGCTGGTTCGTGTCCAACGTTGCCAGCCATACAGGAGTAGGGACCAGGATGCAGTACTACAATGAGTTAAAGAAGTACATCGATGTGCgcatttttggaagaatggcTGGAGCGCGCTTGAGAGATGAAGACTACTACTCCACTATGGCTACCTGTAAGTTCTACCTTGCTTTTGAGAACTCCATTCACAAGGACTACATCACAGAGAAATTAAACGGTCCTCTCGCAGTGGGAACCGTCCCTGTCGTCATGGGGCCTCCAAGACAAAATTATGAAGACTTTGCTCCAGGTAATTCCTTCATTCATGTTAATGACTTCCCTGATGCTCAAGCACTGGCTAATCGTCTGCTTCAGCTGGACAAAGATGACGAAGCTTACAAGCACTACTTTGATTGGAGAAAACATGTGACTGCGACTCCACATCTGGTCATTTGGAATCAAGAGTTTATCATATATATCTGTCACGCCTGTGAATATATTGGAAGGCACAAAGAGTATAAAGCTGCACATGACATCTACAAGTGGTGGTTTTCATAAAGAAGAACTTGAGCACTATCATTATCATTCCATCATTATAAACCTTTAGGACTGGGCTGAGATTTCTTTGTAAGTCGGTAATGATTCCTGAATGCTAGCTATAATAACATGCTATAAGTAATTCGTGAGAACTCATTATCATATTAGTGTCAATTAGATTCATTACAGTGCCACATGGTGTGCTATTAACAATTAGGAAAACATTATAAATGTCATACaacttatatataatattaaagtaattattttacatacgattttttttaaactaaaattattttaaacattactgTTTTAAACATATGTTCTTTTTACTTGATGAACTGAATGACGtcatttttataacttttttttttaattattgactATAACAGTTGCTTAATAATTATGCACAGGTCATTATGAGTTATAAATGTTGTAAAGTACACCACATGGCATGATAATGAATAGTTCAATCTTACGACTATAAAGAAATGACATATTAAATGGCATTATTCAGGAATTACGaccaacttaaaaaaaaattttggaagcACTATTATAATGATTTGTGACAAGCTTAATAGAAAATGTTACTGAACTTTTAATGTTGTCatcaattttaatgaaaatatttatatatttttttctcactttgaaaatatatgttttttggTACGGATAAACATGAAGATGCTGATGATACATGATTTCCATATGCGATTGTTCTCAGTAGTGCAATATAGAAATTAATGAATGACTTATGACTTATTGGTTTGTTTATACCATGTTAATGTGGCTAATCTGACATAAAAGCTGTAATGGTTCACTGCGAGCAAGAGAGCAAACAAGAAGGAACAGGAACATAATAATGAAGACAGTAGATTGAAGCATATCGCATAtcgggattttttttctgtgtgtactTTAATATCGAGTTTGATTGGTTGGGATTGGTACTTTCTTGTTCATTCTGGTTTTTCTGGGAATACTGTGCATGATTTGCAACTATAAAGAATTTGATGTTCACTGTGTGAA

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65916 lncRNA downstream 195576 31323154 ~ 31323464 (-) True G55992
TU65343 lncRNA downstream 895835 30619177 ~ 30623205 (-) True G55449
XR_004577790.1 lncRNA downstream 900853 30593157 ~ 30618187 (-) True LOC113542125
XR_004577791.1 lncRNA downstream 900855 30593157 ~ 30618185 (-) False LOC113542125
XR_003404263.2 lncRNA downstream 900856 30571345 ~ 30618184 (-) False LOC113542125
TU66118 lncRNA upstream 108195 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 132151 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 132151 31657051 ~ 31675951 (-) True LOC117596876
TU66258 lncRNA upstream 162363 31687263 ~ 31687472 (-) False fndc5a
TU66264 lncRNA upstream 203873 31728773 ~ 31730112 (-) True G56279
XM_026939480.2 mRNA downstream 493195 31022661 ~ 31025845 (-) True si:ch1073-126c3.2
XM_026939519.2 mRNA downstream 512578 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA downstream 512578 30920905 ~ 31006462 (-) True gfra1a
XM_026939161.2 mRNA downstream 765362 30746232 ~ 30753678 (-) True LOC113541964
XM_026939200.2 mRNA downstream 799340 30705014 ~ 30719700 (-) True fam204a
XM_026939213.2 mRNA upstream 21001 31545901 ~ 31548633 (-) True LOC113541990
XM_026939215.2 mRNA upstream 88702 31613602 ~ 31620331 (-) True slc30a10
XM_034302651.1 mRNA upstream 153483 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA upstream 153483 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA upstream 153483 31678383 ~ 31830928 (-) False fndc5a
trnag-gcc_4 other downstream 658534 30860436 ~ 30860506 (-) True trnag-gcc_4
trnag-gcc_3 other downstream 667033 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_2 other downstream 763564 30755406 ~ 30755476 (-) True trnag-gcc_2
TU65130 other downstream 1174502 30340408 ~ 30344538 (-) True rsrp1
XR_004577810.1 other downstream 1357817 30153487 ~ 30161223 (-) False khdrbs1a
XR_004577789.1 other upstream 21460 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 38655 31563555 ~ 31600685 (-) True G56150
TU66257 other upstream 302914 31827814 ~ 31829484 (-) True G56272
TU66291 other upstream 312282 31837182 ~ 31838235 (-) True G56303
XR_004577843.1 other upstream 714701 32239601 ~ 32289607 (-) False brf1a

Expression Profile