RNA id: XR_003403906.2


Basic Information

Item Value
RNA id XR_003403906.2
length 2078
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113539127
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22424419 ~ 22449509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGCACATATTTGTGACCGGTGGCTTTATTGGCgcgtaaaagaaaaaaaaaacacatactatttttaatatttggTTTCTAGCCAGTGAATTATGAGCAGTATTAGCATCCACGGCTGAGGTGCAACAGCTTTCTGGATATGGATGATATGAGGATAGAAGTGAAATGAGGATTGAGAGGGatcatctctctccatctcactcatCCGCCTACAACTGTTGTCGCAGTGTCGCTCTCTCCCACTGCAGATGCCACGCTGGCTTGCTTCCCGCTGGCACGGAAGGGCCAGATTGGTACCGGGATCAGCTCCAAGATGTCCAAGATCCGCTTCAGATTCAGGAAAGTCAAGCAGGACAGACATGAGCAGTGACAGAATTATTGTGCATATTGCAGAACTATAATGCTCTTTGAGGGAAAAATGATTTTGTGGCAAGTCTTTGCGcatatgattttgtgtgtgggtgtgtatgtgtgtaagacTGCTCTGTTAGGCAAGGGTTTGCAGTGTGGGTTTAGgatgtatctgtatctgtttagtactcaaaaatattcatatctgtatctgtattctgACTTGAACTCTTTAAACCAGaagtgctgtttgtttgtttgttttaatatgaaccctacctctaaaatataaacaatctaGTAGCCTAGTTAAACCACTGCAACTCTGGCCAAGCAGCTACTATGTGCATCGTGCTGTTCCAtgtgtttatgttaatgaacatggtctttctttgtcctatGATCTTCAAATTTAACCACTCgcacctgcatgaaagtaaaaacttcaCACCCACATGGCTTTTTTATTGTTTCCCAATACACACCTCCAGTCTCAACCACATGCCAGTGGAAAGCTTTCTATAAAAAATTTCCTACACACTTCTTTTTAATCTGCTAATGCAAGGTGGTCTGTCTGATTTGGATTGGGAGATATATTTCTCCACTGTAGAGAAGCAACCATCACTAGCAGGGAATCTCAGGTGTGAGTTCCATTACCCAGCACAGGTACCTCTGCTCTTCAACTTCATCAATCGTGATTCCCTCAGTGCCTCCTAGCCCCCATGCCAGATAGACCTCAGGCCTTCAAACGGAGGTGGTGGGGGGATTATTCAATTATCTTCGGCCACACAAAATGAAGTATGACAGGCTCCCAGTGAGCATATCGTAGGCTACATGTCAATGTCAATGAAAGGATACCAGGCTATTAAAAGCTTTGGTCCTCAGTTTAGTTTCCCTTTTCCTTGCAGTAAGTGGAACATAGGGAATTAAACTGTCCACTATTAATGGGATGTGATGGCAAGAAGACGGCAAGaagaaatgttgtggaacagtaTTGGAACAACATTTGAGCAATTCTGGAGATCTTGTATGCTTCAGGAGATGGGAGAACTTTTGTTGATTCAAGCTCTCCATTTAGTGCATTATAATCTCTTGTTCACCCCTCTGTCATCTATTGATGCTTGGTTGATACCTTCACTCCATAGGGATGAAGGTTATGTCGAGGACAGCAAGATTGATTAGAGCAGGCTGACAGCAGAAGCCTCTGAGACAGACATAATGCTTTCCTTTTCTTCATAGTTGTTTTCCACAAATAAATCACTGCAATTTATAGAATTTCTACCTCAAGAAGTCTGTTCTTTCAAACCACCAAGTCTTACTCAAATAGTGGCCAAAgatgtctgtgtttctgtgtagccaatcataaaaaaaattgattgacACAAAACACTGTTATTTTGCACTGTGGATAAATAGTGAATTATGCTATTAGGCCAAGATGTTAGTCCAAGAAGTGAACTCATTAGGGAATTTTTGGGTACTTTCTCTTTGATCACAGAGACACAGTATCACTGTGTCAAATACAAattatgtaacatttaacaatgtgcatTTAGATGTATTTTTTGAGGCTTTGTATTCTCATCTCTTCACCTATTTCTGGTCTGTTTCCATGGTAGTATAAATGAGAAAGACATATGAGCATAATTTGGACCCGGACTGTGTGTTCACTAATGGAGCGCTATGATGTAAATGCCACCAGAATTAAAGATTCTATTAGATCTCA

Function

GO: NA

KEGG:

id description
ko03450 Non-homologous end-joining

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60200 lncRNA upstream 87375 22266697 ~ 22337044 (+) False G50929
TU60216 lncRNA upstream 136317 22285438 ~ 22288102 (+) True G50938
TU60202 lncRNA upstream 155911 22266697 ~ 22268508 (+) True G50929
TU60203 lncRNA upstream 155911 22266697 ~ 22268508 (+) False G50929
TU60204 lncRNA upstream 155911 22266697 ~ 22268508 (+) False G50929
TU60476 lncRNA downstream 81642 22531151 ~ 22550174 (+) True LOC113538739
TU60477 lncRNA downstream 84829 22534338 ~ 22536437 (+) True G51161
XR_004577901.1 lncRNA downstream 279813 22729322 ~ 22736667 (+) False LOC117596907
XR_004577900.1 lncRNA downstream 279823 22729332 ~ 22736667 (+) True LOC117596907
XR_004577902.1 lncRNA downstream 280143 22729652 ~ 22736667 (+) False LOC117596907
XM_026943156.2 mRNA upstream 159000 22244109 ~ 22265419 (+) True prph2b
XM_034302562.1 mRNA upstream 400859 22020322 ~ 22023560 (+) False wu:fj16a03
XM_026932110.2 mRNA upstream 453459 21967741 ~ 21970960 (+) True LOC113537563
XM_026932766.2 mRNA upstream 464020 21954905 ~ 21960399 (+) True LOC113537982
XM_034302654.1 mRNA downstream 35801 22485310 ~ 22552752 (+) False LOC113538739
XM_026934084.2 mRNA downstream 35802 22485311 ~ 22546038 (+) False LOC113538739
XM_026934075.2 mRNA downstream 35803 22485312 ~ 22552752 (+) False LOC113538739
XM_026934094.2 mRNA downstream 35804 22485313 ~ 22546449 (+) False LOC113538739
XM_026934066.2 mRNA downstream 35804 22485313 ~ 22546038 (+) False LOC113538739
TU60121 other upstream 400608 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1418900 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1848940 20574973 ~ 20575479 (+) True G49862
XR_003403774.2 other upstream 3068321 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 334819 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 664676 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1004919 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1247523 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1344171 23793680 ~ 23805495 (+) False slc29a3

Expression Profile