Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404251.2 |
| length | 721 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC113542054 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 27978444 ~ 28028256 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko03460 | Fanconi anemia pathway |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU63459 | lncRNA | downstream | 188837 | 27530576 ~ 27803450 (-) | False | G53729 |
| TU63458 | lncRNA | downstream | 459329 | 27530679 ~ 27532958 (-) | True | G53729 |
| TU63617 | lncRNA | downstream | 624227 | 27367361 ~ 27368060 (-) | True | G53862 |
| TU63597 | lncRNA | downstream | 672665 | 27318088 ~ 27319622 (-) | True | G53851 |
| XR_004577875.1 | lncRNA | downstream | 677936 | 27305874 ~ 27314351 (-) | True | LOC117596885 |
| TU63967 | lncRNA | upstream | 72118 | 28100373 ~ 28100589 (-) | True | G54201 |
| TU63970 | lncRNA | upstream | 78460 | 28106715 ~ 28175966 (-) | False | G54204 |
| TU63973 | lncRNA | upstream | 78460 | 28106715 ~ 28107820 (-) | True | G54204 |
| TU63977 | lncRNA | upstream | 78460 | 28106715 ~ 28107820 (-) | False | G54204 |
| TU63993 | lncRNA | upstream | 118083 | 28146338 ~ 28146866 (-) | True | G54219 |
| XM_034302635.1 | mRNA | downstream | 394240 | 27562257 ~ 27598047 (-) | False | mcph1 |
| XM_026939280.2 | mRNA | downstream | 394335 | 27562257 ~ 27597952 (-) | False | mcph1 |
| XM_026939283.2 | mRNA | downstream | 394643 | 27562257 ~ 27597644 (-) | False | mcph1 |
| XM_026939281.2 | mRNA | downstream | 394643 | 27562257 ~ 27597644 (-) | True | mcph1 |
| XM_026939279.2 | mRNA | downstream | 394644 | 27562258 ~ 27597643 (-) | False | mcph1 |
| XM_026939399.2 | mRNA | upstream | 39518 | 28067773 ~ 28099456 (-) | True | myom2b |
| XM_034303053.1 | mRNA | upstream | 39518 | 28067773 ~ 28097920 (-) | False | myom2b |
| XM_026939320.2 | mRNA | upstream | 286458 | 28314713 ~ 28330532 (-) | True | oit3 |
| XM_026939354.2 | mRNA | upstream | 305370 | 28333625 ~ 28388691 (-) | True | mcu |
| XM_026939481.2 | mRNA | upstream | 408750 | 28437005 ~ 28446340 (-) | True | nolc1 |
| TU63465 | other | downstream | 450988 | 27537776 ~ 27541299 (-) | False | zgc:163080 |
| XR_003404274.1 | other | downstream | 2082168 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
| XR_004577835.1 | other | downstream | 3256400 | 24682246 ~ 24735887 (-) | False | herc4 |
| XR_003404244.2 | other | downstream | 3340440 | 24453119 ~ 24651847 (-) | False | lyst |
| TU64047 | other | upstream | 404965 | 28433220 ~ 28435411 (-) | True | G54269 |
| trnae-cuc_11 | other | upstream | 1173677 | 29201932 ~ 29202003 (-) | True | trnae-cuc_11 |
| LOC113541988 | other | upstream | 1651156 | 29679411 ~ 29681726 (-) | True | LOC113541988 |
| TU65059 | other | upstream | 2083576 | 30111831 ~ 30122655 (-) | True | G55209 |
| TU65057 | other | upstream | 2083779 | 30112034 ~ 30122822 (-) | False | G55209 |
