Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404264.2 |
| length | 949 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 4 |
| gene id | LOC113542125 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 30504336 ~ 30618187 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65284 | lncRNA | downstream | 93735 | 30472604 ~ 30477610 (-) | True | G55400 |
| TU65286 | lncRNA | downstream | 95490 | 30474736 ~ 30475855 (-) | False | G55400 |
| TU65232 | lncRNA | downstream | 156876 | 30355571 ~ 30414469 (-) | True | G55351 |
| XR_004577788.1 | lncRNA | downstream | 169949 | 30397412 ~ 30401396 (-) | True | LOC113541972 |
| TU65226 | lncRNA | downstream | 183808 | 30347170 ~ 30387537 (-) | True | G55349 |
| TU65343 | lncRNA | upstream | 1000 | 30619177 ~ 30623205 (-) | True | G55449 |
| TU65916 | lncRNA | upstream | 704977 | 31323154 ~ 31323464 (-) | True | G55992 |
| TU66118 | lncRNA | upstream | 1014918 | 31633095 ~ 31633326 (-) | True | G56173 |
| XR_004577870.1 | lncRNA | upstream | 1038874 | 31657051 ~ 31675951 (-) | False | LOC117596876 |
| XR_004577871.1 | lncRNA | upstream | 1038874 | 31657051 ~ 31675951 (-) | True | LOC117596876 |
| XM_026939476.2 | mRNA | downstream | 113225 | 30447258 ~ 30458120 (-) | False | LOC113542134 |
| XM_026939477.2 | mRNA | downstream | 119955 | 30447258 ~ 30451390 (-) | True | LOC113542134 |
| XM_026939174.2 | mRNA | downstream | 194296 | 30368672 ~ 30377049 (-) | True | rhd |
| XM_034303166.1 | mRNA | downstream | 219052 | 30345121 ~ 30352293 (-) | False | eif2ak2 |
| XM_026939520.2 | mRNA | upstream | 5072 | 30623249 ~ 30642158 (-) | True | LOC113542166 |
| XM_026939200.2 | mRNA | upstream | 86837 | 30705014 ~ 30719700 (-) | True | fam204a |
| XM_026939161.2 | mRNA | upstream | 128055 | 30746232 ~ 30753678 (-) | True | LOC113541964 |
| XM_026939519.2 | mRNA | upstream | 302728 | 30920905 ~ 31006462 (-) | False | gfra1a |
| XM_026939518.2 | mRNA | upstream | 302728 | 30920905 ~ 31006462 (-) | True | gfra1a |
| TU65130 | other | downstream | 226807 | 30340408 ~ 30344538 (-) | True | rsrp1 |
| XR_004577811.1 | other | downstream | 410122 | 30152908 ~ 30161223 (-) | True | khdrbs1a |
| XR_004577810.1 | other | downstream | 410122 | 30153487 ~ 30161223 (-) | False | khdrbs1a |
| TU65057 | other | downstream | 448523 | 30112034 ~ 30122822 (-) | False | G55209 |
| trnag-gcc_2 | other | upstream | 137229 | 30755406 ~ 30755476 (-) | True | trnag-gcc_2 |
| trnag-gcc_3 | other | upstream | 233760 | 30851937 ~ 30852007 (-) | True | trnag-gcc_3 |
| trnag-gcc_4 | other | upstream | 242259 | 30860436 ~ 30860506 (-) | True | trnag-gcc_4 |
| XR_004577789.1 | other | upstream | 928183 | 31546360 ~ 31548633 (-) | False | LOC113541990 |
| TU66090 | other | upstream | 945378 | 31563555 ~ 31600685 (-) | True | G56150 |
