RNA id: XR_004577790.1


Basic Information

Item Value
RNA id XR_004577790.1
length 3061
lncRNA type inter_gene
GC content 0.42
exon number 7
gene id LOC113542125
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30504336 ~ 30618187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGCAATAATTGAGTGCACCTGGAACTGTAGTCACGTGACTGATGAACGTAAACTAGGTGGCTAATTTACTGTAGCTTCTatttcacaacaacaacaaagaagtGTTTGGCCGTCAAAGGAAAATAGATAAAACACACTCTTTATTATGAAATTACACGACAGGactGTTCTTGGCGAAATCAGAACCCATGATGTGTGTCGTCTCACAAACAAGGTCCCAGATCTGTTCCTGGATGGAGGAAGCCATTTTGAGGTGAAGTTTTCTCAGATCTCAACTGTGCAAGTGCTGACTGAGGGCTCAGCTCATGGAGGGAAGGGTCGGCCTAGAAAAACTCAGTTTAGTCTGTTGATCTAAACGGTCCGTGGGGtaTATCTCTCTCTTGGCCTGAATCACCAATTGTTCCAGTATAAAGGGAGAAAATGGTTTTACAATGTTTTCTACCTGCATCACAAGGGGATTGAGCCTCTGCACTACTGAATGACACAGCAAGCACTTTGACGTGTATTTTTCTATGAAGTCCCAACAGACACCGACCAGATCAGAGAACGGCAGCAGAAGAGCGTCTCACAGCAGACCTGCTGGGAGGAGTGAAGGATTTCAGCttggtctgaaaaaaatatcagtaacATTTCAAGAGAGATGTGCTTCTTGAATACACTGCCCCTACTGATAGTGTTCCTGCGGTTAGGTAAGCAGTTTGATGTCTTAAACTGAAACGACAACGTATGCTAAGAATCCACTTCCCTGCCAAGTTTGGCTTTTTCAGCGGCAGACTTTGAATTTGACCCTGGTTTGACCACTGGGGCAACTCTTTTTACACTGTTATTGTattagtttcattcttttcaaTGATAAATCTTTGTACTCGGCAgaatatatttcacaaactgtCACTCCTGAAAGCACCCCCATCCATGTTAAACAACCTTGTGTTCTTGggaatataatattatattaaacagtCGGGGGGGAGAGGAAATGGAAAAAGCGCTTAAGCAATGTGGAACGTCTTAAAACAGAATTGCAACACtcacaaagtaaaaaaaaaaaaagggccggTGTTTGAGACTTGACATCAAAAGTATCGTCCtcatggcaaattgctgcgACTCTAATCAGACGCAGCTGCGGCCATCTCTTCTGTTTTATCGCAACTTTATGACTTCCTAACCAATTGGTCAACAGGTGCCTGTCTTTGTAAACCCAAAGCGAGCATTCAGTAGACGCGATCACATTAAATGCCATCGCTGCTGCGCCGCACCGCcgtctctccttccttccttctttcgcCATAGTTACAATTTTGATGTTGATTTATGAAGTGTCCCACACTGAGGTCAGCGGCCTATCTGAGATTTATGAAACAGCCACTGAGAAGAGAGCGAGGCAACCCGATCTATCAGCCTTTATTATTGTTGTGACTCTGCCGTTATAACCTCCCTCACATGCTTCACTCTCAGTCAATTGAGGAGGGTTTGTTTGAAGACAGAAGGCAGATTCGGTAATCGGTACATGCGGCATACTTCAGTGAATCCGCACGGCTTCGCTCAAATATCTCGTCTTCCCGTCGTTAATGCATTACATGTCCCTTAATATGCTGAAGCAAGTGAATTTATCACTCTAATTGCTGTAGTACATCATGATCTCTTTAGGACTCTTTTAGTCTGTAGAAAGGGATATGATTACAAACAGGACCTTATTCAGGAATACATGCACGTGGGACATCTTGTGTTCCTACACCAGCAAAGCTTTTCACAAAATAACATGCACTTTAAAGCAGCATCGTACATACAGGGCATACAGTTTTGCATAAGCGAGAATGCTTGTTTGGCATAACACATTCCTCATCAAGCTTATTTGATTCACAAAGCATGAACGTGAGACATGCAGTCTTTGGTTTTACTTGCATAAGAATACTTTGTTTGGATAAAAATAATACTCACTTAAAAGCAAGATCACACAAGTAAGAATGCCTATTGGCCTAACCGAGTCATGATCAAGCTGATTTGAAATAATGCGCAGGTCACAGTTGCACAAATGCTCTTTTTGTAGCAATGGCTCTGGGTTTGTCAGTGGGCGTCTTCCTGCCCTGCCAGGTTGCAGACTCCGTTTCTGCTCCAGATTGACGAATAAAGTCATATTCTGGGTTGCGTAGGACGACTTGCTTGGCATCCAGCGCCGACGAGTGGATTAAGCGGAGGCCGTGCCATCTCTGAATGGCACCCCATTGCCATGGAGACGAGCGTCGCTCAGCATCAGCACCACGTTCCACACGTTTGACACTCGAGCTCTCAGATGGGCGTGCAGCAACGACGACAAACAGCGGCATATTTCCACCGCTACCTCACATATGTTAAATTTTCTGAAGTAAATTTGGCATGTCTAAAAACTAGgataatgatgataaatgtGACAGCCTGAAAAACTAATTACAATTGTCTCCCTGCATTCTCCAACGCACGCCTGTATGAAAAACTCATTTAAATCTTCCACAAGTCCAAAAGACAGTCTTGCTCTAAAGCCATTTGGCACACTCGCTCACCCAGTTTACATTTCCAGAGGATTAGCAGAAGAGCTTGAAATAATCATGCCAGATGTCTCCTTACACCCAGAAAAAGAGCCTGCCCATTGGGCATTtgggtttttattgtatttttttctctttttttatcacTCTTAAGTGCAAACACTTTAGAGCCCTTGGAATGCTTGGCCTCATGTCGTGATGTCATGTAAGCAAATTAAATTCCTCTCATGTCTGTCGAGTTTTATGGCATCACTATATTTAATCATTgctcctgtttgtttttttgttatagtAGCTGCCTATCGAGTAGCTGAACAGATTCTGTTGTTGGGAAATGTTTAAAACTAAACCTAATGGAACGCTTTAAAGAAATGACGTAGACCAATATGATGATGTAATTCTGTATCTCTACGTATTCAAACAGTGATAAGTCCCCCTGTGTGACGTGTATTTAAAGATATTAATATCGACAGTGTTACCTGGCAAATATAGCAACTTTTCAccatgtgtttttcttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65284 lncRNA downstream 115547 30472604 ~ 30477610 (-) True G55400
TU65286 lncRNA downstream 117302 30474736 ~ 30475855 (-) False G55400
TU65232 lncRNA downstream 178688 30355571 ~ 30414469 (-) True G55351
XR_004577788.1 lncRNA downstream 191761 30397412 ~ 30401396 (-) True LOC113541972
TU65226 lncRNA downstream 205620 30347170 ~ 30387537 (-) True G55349
TU65343 lncRNA upstream 990 30619177 ~ 30623205 (-) True G55449
TU65916 lncRNA upstream 704967 31323154 ~ 31323464 (-) True G55992
TU66118 lncRNA upstream 1014908 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 1038864 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 1038864 31657051 ~ 31675951 (-) True LOC117596876
XM_026939476.2 mRNA downstream 135037 30447258 ~ 30458120 (-) False LOC113542134
XM_026939477.2 mRNA downstream 141767 30447258 ~ 30451390 (-) True LOC113542134
XM_026939174.2 mRNA downstream 216108 30368672 ~ 30377049 (-) True rhd
XM_034303166.1 mRNA downstream 240864 30345121 ~ 30352293 (-) False eif2ak2
XM_026939520.2 mRNA upstream 5062 30623249 ~ 30642158 (-) True LOC113542166
XM_026939200.2 mRNA upstream 86827 30705014 ~ 30719700 (-) True fam204a
XM_026939161.2 mRNA upstream 128045 30746232 ~ 30753678 (-) True LOC113541964
XM_026939519.2 mRNA upstream 302718 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA upstream 302718 30920905 ~ 31006462 (-) True gfra1a
TU65130 other downstream 248619 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 431934 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 431934 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 470335 30112034 ~ 30122822 (-) False G55209
trnag-gcc_2 other upstream 137219 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 233750 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 242249 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 928173 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 945368 31563555 ~ 31600685 (-) True G56150

Expression Profile