Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404267.2 |
| length | 672 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC113542161 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 27527865 ~ 27530466 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577721.1 | lncRNA | upstream | 172433 | 27348910 ~ 27355673 (+) | True | LOC113541894 |
| TU63096 | lncRNA | upstream | 187010 | 27337047 ~ 27341096 (+) | True | G53402 |
| XR_004577892.1 | lncRNA | upstream | 254929 | 27261131 ~ 27273177 (+) | True | LOC117596902 |
| TU63030 | lncRNA | upstream | 283948 | 27242955 ~ 27244158 (+) | True | G53340 |
| TU63002 | lncRNA | upstream | 406167 | 27111544 ~ 27121939 (+) | True | G53312 |
| TU63021 | lncRNA | downstream | 29706 | 27560172 ~ 27562940 (+) | True | G53331 |
| TU63329 | lncRNA | downstream | 534177 | 28064643 ~ 28067481 (+) | True | G53614 |
| TU63332 | lncRNA | downstream | 570147 | 28100613 ~ 28100831 (+) | True | G53616 |
| TU63383 | lncRNA | downstream | 737255 | 28267721 ~ 28267965 (+) | True | G53665 |
| TU63384 | lncRNA | downstream | 737592 | 28268058 ~ 28268341 (+) | True | G53666 |
| XM_026939324.2 | mRNA | upstream | 10419 | 27507235 ~ 27517687 (+) | True | gtpbp2a |
| XM_026939325.2 | mRNA | upstream | 10419 | 27507558 ~ 27517687 (+) | False | gtpbp2a |
| XM_026939450.2 | mRNA | upstream | 92117 | 27425842 ~ 27435989 (+) | True | LOC113542114 |
| XM_026939508.2 | mRNA | upstream | 134910 | 27386257 ~ 27393196 (+) | True | plek |
| XM_026939076.2 | mRNA | upstream | 162635 | 27360842 ~ 27365471 (+) | True | pno1 |
| XM_026939226.2 | mRNA | downstream | 2253 | 27532719 ~ 27537671 (+) | True | gsta.1 |
| XM_034302633.1 | mRNA | downstream | 67648 | 27598114 ~ 27997810 (+) | True | csmd1a |
| XM_026939513.2 | mRNA | downstream | 570906 | 28101372 ~ 28107827 (+) | True | rnaset2 |
| XM_026939545.2 | mRNA | downstream | 586294 | 28116760 ~ 28148448 (+) | True | rps6ka2 |
| XM_034302897.1 | mRNA | downstream | 590980 | 28121446 ~ 28148448 (+) | False | rps6ka2 |
| XR_003404257.2 | other | upstream | 320861 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | upstream | 321711 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | upstream | 321736 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63018 | other | upstream | 535395 | 26985978 ~ 26992711 (+) | True | G53328 |
| TU61306 | other | upstream | 3470219 | 24055241 ~ 24057887 (+) | True | LOC113540163 |
| TU63410 | other | downstream | 916911 | 28447377 ~ 28448311 (+) | True | G53692 |
| trnav-cac | other | downstream | 1574978 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| trnav-aac | other | downstream | 1577376 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| XR_004577899.1 | other | downstream | 2181792 | 29712258 ~ 29747347 (+) | False | ablim1a |
| TU64923 | other | downstream | 2407082 | 29937548 ~ 29941181 (+) | True | G55091 |
