Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404270.2 |
| length | 982 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC113542173 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 29451896 ~ 29474301 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU64518 | lncRNA | upstream | 267441 | 29124493 ~ 29184455 (+) | True | G54725 |
| TU64516 | lncRNA | upstream | 308516 | 29118066 ~ 29143380 (+) | True | G54724 |
| TU63419 | lncRNA | upstream | 955290 | 28493548 ~ 28496606 (+) | True | LOC113542011 |
| TU63425 | lncRNA | upstream | 967998 | 28483699 ~ 28483898 (+) | True | G53702 |
| TU63422 | lncRNA | upstream | 983913 | 28467773 ~ 28467983 (+) | True | G53699 |
| TU64762 | lncRNA | downstream | 206225 | 29680526 ~ 29684999 (+) | True | G54958 |
| TU64763 | lncRNA | downstream | 209708 | 29684009 ~ 29684999 (+) | False | G54958 |
| TU64777 | lncRNA | downstream | 270862 | 29745163 ~ 29748504 (+) | False | ablim1a |
| XR_003404265.2 | lncRNA | downstream | 391455 | 29865756 ~ 29870830 (+) | True | LOC113542139 |
| TU64967 | lncRNA | downstream | 664974 | 30139275 ~ 30139776 (+) | True | G55129 |
| XM_026939342.2 | mRNA | upstream | 90787 | 29163415 ~ 29361109 (+) | False | LOC113542066 |
| XM_026939341.2 | mRNA | upstream | 90787 | 29163586 ~ 29361109 (+) | False | LOC113542066 |
| XM_026939339.2 | mRNA | upstream | 90787 | 29164629 ~ 29361109 (+) | False | LOC113542066 |
| XM_026939340.2 | mRNA | upstream | 90787 | 29170284 ~ 29361109 (+) | True | LOC113542066 |
| XM_034302991.1 | mRNA | upstream | 90787 | 29267336 ~ 29361109 (+) | False | LOC113542066 |
| XM_026939187.2 | mRNA | downstream | 221976 | 29696277 ~ 29707979 (+) | True | fam160b1 |
| XM_034303133.1 | mRNA | downstream | 238036 | 29712337 ~ 29747481 (+) | False | ablim1a |
| XM_026939431.2 | mRNA | downstream | 238037 | 29712338 ~ 29747481 (+) | False | ablim1a |
| XM_026939428.2 | mRNA | downstream | 238037 | 29712338 ~ 29747481 (+) | False | ablim1a |
| XM_026939426.2 | mRNA | downstream | 238038 | 29712339 ~ 29748505 (+) | True | ablim1a |
| trnav-aac | other | upstream | 343982 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| trnav-cac | other | upstream | 346380 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| TU63410 | other | upstream | 1003585 | 28447377 ~ 28448311 (+) | True | G53692 |
| XR_004577886.1 | other | upstream | 2245501 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_004577899.1 | other | downstream | 237957 | 29712258 ~ 29747347 (+) | False | ablim1a |
| TU64923 | other | downstream | 463247 | 29937548 ~ 29941181 (+) | True | G55091 |
| TU65142 | other | downstream | 880021 | 30354322 ~ 30358454 (+) | False | mgst3b |
| TU65162 | other | downstream | 1005631 | 30479932 ~ 30486287 (+) | False | LOC113542119 |
| TU66180 | other | downstream | 2311484 | 31785785 ~ 31796326 (+) | True | G56222 |
