Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577807.1 |
| length | 556 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 4 |
| gene id | LOC113544235 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 21893534 ~ 21899039 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU60045 | lncRNA | downstream | 11428 | 21881886 ~ 21882106 (-) | True | G50802 |
| XR_004577805.1 | lncRNA | downstream | 106889 | 21767814 ~ 21786645 (-) | True | LOC117596829 |
| TU59895 | lncRNA | downstream | 156140 | 21659658 ~ 21737394 (-) | True | G50656 |
| TU59884 | lncRNA | downstream | 282637 | 21606428 ~ 21610897 (-) | True | G50647 |
| TU59860 | lncRNA | downstream | 375456 | 21517815 ~ 21518078 (-) | True | G50626 |
| XR_003404516.2 | lncRNA | upstream | 104232 | 22001047 ~ 22003733 (-) | True | LOC113544581 |
| TU60104 | lncRNA | upstream | 104732 | 22001547 ~ 22003772 (-) | False | LOC113544581 |
| TU60333 | lncRNA | upstream | 138128 | 22034943 ~ 22035162 (-) | True | G51050 |
| TU60351 | lncRNA | upstream | 161338 | 22058153 ~ 22059321 (-) | True | G51053 |
| TU60359 | lncRNA | upstream | 210277 | 22107092 ~ 22192916 (-) | True | G51058 |
| XM_034303051.1 | mRNA | downstream | 248022 | 21611663 ~ 21645512 (-) | True | plekhh2 |
| XM_034303052.1 | mRNA | downstream | 248036 | 21611663 ~ 21645498 (-) | False | plekhh2 |
| XM_026935721.2 | mRNA | downstream | 291275 | 21577863 ~ 21602259 (-) | False | si:ch73-105b23.6 |
| XM_026935712.2 | mRNA | downstream | 291275 | 21577863 ~ 21602259 (-) | True | si:ch73-105b23.6 |
| XM_026935733.2 | mRNA | downstream | 319453 | 21569456 ~ 21574081 (-) | True | calm2a |
| XM_026944078.2 | mRNA | upstream | 12166 | 21908981 ~ 21910793 (-) | True | LOC113544981 |
| XM_034301397.1 | mRNA | upstream | 139017 | 22035832 ~ 22123649 (-) | True | LOC113540944 |
| XM_034301391.1 | mRNA | upstream | 139017 | 22035832 ~ 22085504 (-) | False | LOC113540944 |
| XM_034301408.1 | mRNA | upstream | 139017 | 22035832 ~ 22085503 (-) | False | LOC113540944 |
| XM_034301384.1 | mRNA | upstream | 139017 | 22035832 ~ 22085503 (-) | False | LOC113540944 |
| TU59887 | other | downstream | 279267 | 21611774 ~ 21614267 (-) | False | plekhh2 |
| TU58946 | other | downstream | 1524105 | 20357988 ~ 20369429 (-) | False | gng2 |
| TU58944 | other | downstream | 1524437 | 20357934 ~ 20369097 (-) | False | gng2 |
| TU58943 | other | downstream | 1524437 | 20357988 ~ 20369097 (-) | False | gng2 |
| XR_004577815.1 | other | downstream | 2225873 | 19635838 ~ 19667661 (-) | False | atrn |
| TU60082 | other | upstream | 53040 | 21949855 ~ 21950189 (-) | True | G50837 |
| TU60345 | other | upstream | 138470 | 22035285 ~ 22101383 (-) | False | LOC113540944 |
| XR_003404067.2 | other | upstream | 877540 | 22774355 ~ 22788783 (-) | False | znf318 |
| XR_003404066.2 | other | upstream | 877540 | 22774355 ~ 22788783 (-) | False | znf318 |
| TU60979 | other | upstream | 1551093 | 23447908 ~ 23454217 (-) | True | G51576 |
