Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404617.2 |
| length | 400 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113545496 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 17371442 ~ 17419407 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577905.1 | lncRNA | downstream | 241829 | 17116954 ~ 17129613 (-) | True | LOC117596916 |
| TU56682 | lncRNA | downstream | 280859 | 17090382 ~ 17090583 (-) | True | G47940 |
| TU56621 | lncRNA | downstream | 362393 | 17008840 ~ 17009049 (-) | True | G47882 |
| TU56451 | lncRNA | downstream | 582713 | 16788519 ~ 16788729 (-) | True | G47735 |
| TU56444 | lncRNA | downstream | 603932 | 16765709 ~ 16767510 (-) | True | G47731 |
| TU56927 | lncRNA | upstream | 81226 | 17500633 ~ 17503860 (-) | True | G48158 |
| TU57004 | lncRNA | upstream | 229724 | 17649131 ~ 17662704 (-) | True | G48195 |
| TU57070 | lncRNA | upstream | 289514 | 17708921 ~ 17710376 (-) | True | G48248 |
| TU57076 | lncRNA | upstream | 296828 | 17716235 ~ 17727208 (-) | True | G48250 |
| TU57083 | lncRNA | upstream | 343387 | 17762794 ~ 17765665 (-) | True | G48254 |
| XM_034303043.1 | mRNA | downstream | 94784 | 17132132 ~ 17276658 (-) | False | pcdh15a |
| XM_034303042.1 | mRNA | downstream | 94784 | 17132132 ~ 17276658 (-) | True | pcdh15a |
| XM_034303046.1 | mRNA | downstream | 94784 | 17162070 ~ 17276658 (-) | False | pcdh15a |
| XM_034303044.1 | mRNA | downstream | 94784 | 17162310 ~ 17276658 (-) | False | pcdh15a |
| XM_034303045.1 | mRNA | downstream | 94784 | 17162310 ~ 17276658 (-) | False | pcdh15a |
| XM_026937770.2 | mRNA | upstream | 43305 | 17462712 ~ 17465611 (-) | True | ipmka |
| XM_026935666.2 | mRNA | upstream | 51840 | 17471247 ~ 17476092 (-) | False | cisd1 |
| XM_026935656.2 | mRNA | upstream | 68622 | 17488029 ~ 17491675 (-) | True | galm |
| XM_026932098.2 | mRNA | upstream | 93774 | 17513181 ~ 17522014 (-) | True | hells |
| XM_034302554.1 | mRNA | upstream | 141997 | 17561404 ~ 17574422 (-) | False | LOC113538666 |
| XR_004577773.1 | other | downstream | 388713 | 16979131 ~ 16982729 (-) | False | morn4 |
| XR_004577771.1 | other | downstream | 388713 | 16979131 ~ 16982729 (-) | False | morn4 |
| XR_004577772.1 | other | downstream | 388713 | 16979131 ~ 16982729 (-) | False | morn4 |
| TU55523 | other | downstream | 1954959 | 15413941 ~ 15416483 (-) | False | c3h10orf53 |
| TU55100 | other | downstream | 2586708 | 14779865 ~ 14784734 (-) | False | sdhaf4 |
| TU56907 | other | upstream | 51780 | 17471187 ~ 17476061 (-) | True | cisd1 |
| XR_004577786.1 | other | upstream | 142925 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| XR_004577787.1 | other | upstream | 142925 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| TU56951 | other | upstream | 238174 | 17657581 ~ 17661384 (-) | False | col13a1 |
| TU57664 | other | upstream | 910961 | 18330368 ~ 18613401 (-) | True | lrmda |
