RNA id: XR_003404631.2


Basic Information

Item Value
RNA id XR_003404631.2
length 433
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC113545609
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22004718 ~ 22015489 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAATGTTGATGGCTCTGGGGTAGAATCTGTTACTGAGACTGGTAGAGTGGACATTAATTCACCTGTAGCACCTTCCAGAAGGCAGGAGAGTGAAGAACTGGTGGCAGAAGTGGCTAAGATCTATGGAGATGATGGTTGCTGTGGTGGCATCAGGTGCTGCACCTCCTCCATAGGATGCTGCTTACAGACCGACCAAGTCACCAAGGACAACCTGTGCAATCTTTATAATCATGGGACTGCAGACAATGGGCTGGAGAGGTCAGGACCAGTGAGAACTAGCTTTCCTCTATCAAGGTTGAACTGAGGGGAACAGAAGCACTATGCTGCACAAACTCTGGAGAACTTGTCAGTAAACTTTCATCctcataaaaaaacaaagatccACTGTGTGCTGTTGTCTTTTTGAGAAAGTATAATTTCCCATCACAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60026 lncRNA upstream 129703 21874813 ~ 21875015 (+) True G50783
TU60015 lncRNA upstream 135690 21868824 ~ 21869028 (+) True G50772
TU59732 lncRNA upstream 430665 21567415 ~ 21574053 (+) True G50516
XR_004577869.1 lncRNA upstream 478651 21525437 ~ 21526067 (+) True LOC117596875
TU59746 lncRNA upstream 486963 21516282 ~ 21517755 (+) True G50528
TU60120 lncRNA downstream 4841 22020330 ~ 22023811 (+) False wu:fj16a03
TU60131 lncRNA downstream 19993 22035482 ~ 22041152 (+) True G50880
TU60136 lncRNA downstream 19993 22035482 ~ 22041152 (+) False G50880
TU60140 lncRNA downstream 19993 22035482 ~ 22041152 (+) False G50880
XR_003404546.2 lncRNA downstream 211956 22227445 ~ 22229448 (+) True LOC113544795
XM_026932110.2 mRNA upstream 33758 21967741 ~ 21970960 (+) True LOC113537563
XM_026932766.2 mRNA upstream 44319 21954905 ~ 21960399 (+) True LOC113537982
XM_026932775.2 mRNA upstream 44319 21954905 ~ 21960399 (+) False LOC113537982
XM_026933215.2 mRNA upstream 87050 21914549 ~ 21917668 (+) True hcar1-3
XM_026945610.2 mRNA upstream 99609 21899556 ~ 21905109 (+) True haao
XM_034302562.1 mRNA downstream 4833 22020322 ~ 22023560 (+) False wu:fj16a03
XM_026943156.2 mRNA downstream 228620 22244109 ~ 22265419 (+) True prph2b
XM_034302654.1 mRNA downstream 469821 22485310 ~ 22552752 (+) False LOC113538739
XM_026934084.2 mRNA downstream 469822 22485311 ~ 22546038 (+) False LOC113538739
XM_026934075.2 mRNA downstream 469823 22485312 ~ 22552752 (+) False LOC113538739
trnae-cuc_10 other upstream 999199 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1429239 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2648620 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 5918 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 768839 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1098696 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1438939 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1681543 23697032 ~ 23697294 (+) True G51749

Expression Profile