Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577499.1 |
| length | 547 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117596359 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 16492318 ~ 16531380 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:1900052 | regulation of retinoic acid biosynthetic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU56133 | lncRNA | upstream | 24972 | 16465972 ~ 16467346 (+) | False | marveld1 |
| TU56095 | lncRNA | upstream | 32407 | 16459245 ~ 16459911 (+) | True | G47431 |
| XR_004577907.1 | lncRNA | upstream | 40553 | 16442062 ~ 16451765 (+) | True | LOC117596920 |
| TU56057 | lncRNA | upstream | 95280 | 16395005 ~ 16397038 (+) | True | G47406 |
| TU55957 | lncRNA | upstream | 183475 | 16306468 ~ 16308843 (+) | False | arhgap22 |
| TU56374 | lncRNA | downstream | 306802 | 16838182 ~ 16838401 (+) | True | G47672 |
| TU56549 | lncRNA | downstream | 443694 | 16975074 ~ 16975527 (+) | False | LOC113541016 |
| TU56589 | lncRNA | downstream | 467800 | 16999180 ~ 16999395 (+) | True | G47852 |
| TU56593 | lncRNA | downstream | 475126 | 17006506 ~ 17006922 (+) | True | G47856 |
| TU56693 | lncRNA | downstream | 600082 | 17131462 ~ 17132001 (+) | True | G47951 |
| XM_026932698.2 | mRNA | upstream | 24968 | 16465939 ~ 16467350 (+) | True | marveld1 |
| XM_026942625.2 | mRNA | upstream | 34499 | 16456418 ~ 16457819 (+) | True | mettl18 |
| XM_026938843.2 | mRNA | upstream | 70118 | 16398555 ~ 16422200 (+) | True | antxr1d |
| XM_026933289.2 | mRNA | upstream | 99280 | 16387991 ~ 16393038 (+) | True | gdf10a |
| XM_034301942.1 | mRNA | upstream | 133934 | 16323553 ~ 16358384 (+) | True | ptpn20 |
| XM_026932497.2 | mRNA | downstream | 144740 | 16676120 ~ 16687280 (+) | False | golga7bb |
| XM_026932505.2 | mRNA | downstream | 144746 | 16676126 ~ 16690614 (+) | True | golga7bb |
| XM_026932491.2 | mRNA | downstream | 144747 | 16676127 ~ 16690614 (+) | False | golga7bb |
| XM_026936821.2 | mRNA | downstream | 276520 | 16807900 ~ 16824060 (+) | True | slc25a28 |
| XM_026943482.2 | mRNA | downstream | 333428 | 16864808 ~ 16874716 (+) | True | got1 |
| TU55884 | other | upstream | 255670 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003404341.2 | other | upstream | 419251 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | upstream | 420398 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55629 | other | upstream | 695114 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_004577898.1 | other | upstream | 2124872 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003403773.2 | other | downstream | 2809970 | 19341350 ~ 19356098 (+) | True | sfxn5a |
| XR_004577568.1 | other | downstream | 2809970 | 19341350 ~ 19356098 (+) | False | sfxn5a |
| XR_004577569.1 | other | downstream | 2809970 | 19341350 ~ 19356098 (+) | False | sfxn5a |
| XR_003403774.2 | other | downstream | 2809970 | 19341350 ~ 19356098 (+) | False | sfxn5a |
| XR_003403775.2 | other | downstream | 2809970 | 19341350 ~ 19356098 (+) | False | sfxn5a |
