Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577767.1 |
| length | 711 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117596795 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 6239367 ~ 6262431 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48876 | lncRNA | upstream | 11016 | 6217465 ~ 6228351 (+) | False | inpp4b |
| TU48872 | lncRNA | upstream | 362945 | 5876148 ~ 5876422 (+) | True | G41299 |
| TU48780 | lncRNA | upstream | 419920 | 5818548 ~ 5819447 (+) | True | G41232 |
| TU48564 | lncRNA | upstream | 903802 | 5333384 ~ 5335565 (+) | True | G41049 |
| TU48545 | lncRNA | upstream | 916976 | 5270315 ~ 5322391 (+) | True | G41032 |
| TU48931 | lncRNA | downstream | 41466 | 6303897 ~ 6304105 (+) | True | G41345 |
| TU49224 | lncRNA | downstream | 256628 | 6519059 ~ 6552115 (+) | True | G41600 |
| TU49277 | lncRNA | downstream | 322424 | 6584855 ~ 6585448 (+) | True | G41651 |
| TU49279 | lncRNA | downstream | 336272 | 6598703 ~ 6598967 (+) | True | G41653 |
| TU49280 | lncRNA | downstream | 339481 | 6601912 ~ 6602163 (+) | True | G41654 |
| XM_034302393.1 | mRNA | upstream | 10682 | 6029524 ~ 6228685 (+) | False | inpp4b |
| XM_034302371.1 | mRNA | upstream | 12010 | 5895431 ~ 6227357 (+) | False | inpp4b |
| XM_034302375.1 | mRNA | upstream | 12010 | 5895431 ~ 6227357 (+) | False | inpp4b |
| XM_034302381.1 | mRNA | upstream | 12010 | 5895466 ~ 6227357 (+) | True | inpp4b |
| XM_034302378.1 | mRNA | upstream | 12010 | 5943249 ~ 6227357 (+) | False | inpp4b |
| XM_026945865.2 | mRNA | downstream | 3499 | 6265930 ~ 6295477 (+) | True | rnf150a |
| XM_026939728.2 | mRNA | downstream | 64429 | 6326860 ~ 6371028 (+) | True | tbc1d9 |
| XM_026939737.2 | mRNA | downstream | 64429 | 6326860 ~ 6371028 (+) | False | tbc1d9 |
| XM_026944523.2 | mRNA | downstream | 113138 | 6375569 ~ 6383460 (+) | True | ucp1 |
| XM_026934248.2 | mRNA | downstream | 136463 | 6398894 ~ 6405603 (+) | True | gprin3 |
| XR_003404319.2 | other | upstream | 882670 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | upstream | 897617 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU47789 | other | upstream | 2404756 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 4073583 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45995 | other | upstream | 4148146 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU49753 | other | downstream | 941519 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 1386767 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 2203316 | 8465747 ~ 8466312 (+) | True | G42685 |
| trnak-cuu | other | downstream | 2207193 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU52056 | other | downstream | 4289828 | 10552259 ~ 10558295 (+) | True | sprn |
