Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577788.1 |
| length | 266 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 3 |
| gene id | LOC113541972 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 30397412 ~ 30401396 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65226 | lncRNA | downstream | 9875 | 30347170 ~ 30387537 (-) | True | G55349 |
| TU65230 | lncRNA | downstream | 11016 | 30357954 ~ 30386396 (-) | False | G55351 |
| TU65129 | lncRNA | downstream | 52874 | 30340408 ~ 30344538 (-) | False | rsrp1 |
| TU65128 | lncRNA | downstream | 57562 | 30339477 ~ 30339850 (-) | True | G55270 |
| TU65051 | lncRNA | downstream | 197255 | 30198325 ~ 30200157 (-) | False | runx3 |
| TU65284 | lncRNA | upstream | 71208 | 30472604 ~ 30477610 (-) | True | G55400 |
| TU65286 | lncRNA | upstream | 73340 | 30474736 ~ 30475855 (-) | False | G55400 |
| XR_004577792.1 | lncRNA | upstream | 102940 | 30504336 ~ 30618177 (-) | False | LOC113542125 |
| XR_003404263.2 | lncRNA | upstream | 169949 | 30571345 ~ 30618184 (-) | False | LOC113542125 |
| XR_003404264.2 | lncRNA | upstream | 169949 | 30571345 ~ 30618177 (-) | False | LOC113542125 |
| XM_026939174.2 | mRNA | downstream | 20363 | 30368672 ~ 30377049 (-) | True | rhd |
| XM_034303167.1 | mRNA | downstream | 45118 | 30345121 ~ 30352294 (-) | False | eif2ak2 |
| XM_034303168.1 | mRNA | downstream | 45119 | 30345121 ~ 30352293 (-) | False | eif2ak2 |
| XM_034303166.1 | mRNA | downstream | 45119 | 30345121 ~ 30352293 (-) | False | eif2ak2 |
| XM_026939516.2 | mRNA | downstream | 45119 | 30345121 ~ 30352293 (-) | True | eif2ak2 |
| XM_026939476.2 | mRNA | upstream | 45862 | 30447258 ~ 30458120 (-) | False | LOC113542134 |
| XM_026939477.2 | mRNA | upstream | 45862 | 30447258 ~ 30451390 (-) | True | LOC113542134 |
| XM_026939520.2 | mRNA | upstream | 221853 | 30623249 ~ 30642158 (-) | True | LOC113542166 |
| XM_026939200.2 | mRNA | upstream | 303618 | 30705014 ~ 30719700 (-) | True | fam204a |
| XM_026939161.2 | mRNA | upstream | 344836 | 30746232 ~ 30753678 (-) | True | LOC113541964 |
| TU65130 | other | downstream | 52874 | 30340408 ~ 30344538 (-) | True | rsrp1 |
| XR_004577811.1 | other | downstream | 236189 | 30152908 ~ 30161223 (-) | True | khdrbs1a |
| XR_004577810.1 | other | downstream | 236189 | 30153487 ~ 30161223 (-) | False | khdrbs1a |
| TU65057 | other | downstream | 274590 | 30112034 ~ 30122822 (-) | False | G55209 |
| trnag-gcc_2 | other | upstream | 354010 | 30755406 ~ 30755476 (-) | True | trnag-gcc_2 |
| trnag-gcc_3 | other | upstream | 450541 | 30851937 ~ 30852007 (-) | True | trnag-gcc_3 |
| trnag-gcc_4 | other | upstream | 459040 | 30860436 ~ 30860506 (-) | True | trnag-gcc_4 |
| XR_004577789.1 | other | upstream | 1144964 | 31546360 ~ 31548633 (-) | False | LOC113541990 |
| TU66090 | other | upstream | 1162159 | 31563555 ~ 31600685 (-) | True | G56150 |
