RNA id: XR_004577800.1


Basic Information

Item Value
RNA id XR_004577800.1
length 346
lncRNA type intronic
GC content 0.48
exon number 4
gene id LOC117596827
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 234969 ~ 236237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTACAACCAAGTGACGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaAGTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45309 lncRNA downstream 122918 111818 ~ 112051 (-) True G38277
TU45307 lncRNA downstream 124870 109853 ~ 110099 (-) True G38275
TU45305 lncRNA downstream 125964 108773 ~ 109005 (-) True G38273
TU45265 lncRNA downstream 177211 56882 ~ 57758 (-) False G38240
TU45464 lncRNA upstream 2552 238789 ~ 260075 (-) False LOC117596825
TU45466 lncRNA upstream 33049 269286 ~ 273434 (-) True G38393
TU45476 lncRNA upstream 83590 319827 ~ 320131 (-) True G38401
TU45477 lncRNA upstream 90445 326682 ~ 326986 (-) True G38402
TU45479 lncRNA upstream 106594 342831 ~ 343055 (-) True G38404
XM_026910954.2 mRNA upstream 510101 746338 ~ 755807 (-) True cdkn2a/b
XM_034302560.1 mRNA upstream 602274 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA upstream 602274 838511 ~ 868038 (-) True cxxc4
XM_026910937.2 mRNA upstream 689714 925951 ~ 937449 (-) True ppa2
XM_026910944.2 mRNA upstream 768240 1004477 ~ 1007050 (-) True LOC113524614
TU45461 other upstream 24532 260769 ~ 261151 (-) False LOC117596825
TU45455 other upstream 27249 263486 ~ 267799 (-) False LOC117596825
TU45475 other upstream 78744 314981 ~ 315528 (-) True G38400
TU46718 other upstream 1034304 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 1049571 1285808 ~ 1289815 (-) False cntln

Expression Profile