RNA id: XR_004577801.1


Basic Information

Item Value
RNA id XR_004577801.1
length 234
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117596828
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 623355 ~ 624398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTTCTGAGTGCTCTACATGCAAACCTCACTCACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCAGTGAAATTCACAttcaacatcagtaacatcagcatGCCAGAGAACCCTGGCCTCAGGAATGACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctCTAAACACTCTTCTAAATGAAGCTGGTGCAGAACCATTTGAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45376 lncRNA upstream 283458 338816 ~ 339897 (+) True G38324
TU45375 lncRNA upstream 303335 319816 ~ 320020 (+) True G38323
TU45374 lncRNA upstream 307684 315329 ~ 315671 (+) True G38322
TU45368 lncRNA upstream 348306 269320 ~ 275049 (+) True G38317
XR_004577903.1 lncRNA upstream 481119 140249 ~ 142236 (+) True LOC117596908
TU45414 lncRNA downstream 64272 688670 ~ 699198 (+) True G38361
TU45418 lncRNA downstream 64272 688670 ~ 699198 (+) False G38361
XR_004577806.1 lncRNA downstream 66487 690885 ~ 693150 (+) True LOC117596830
TU45580 lncRNA downstream 85937 710335 ~ 710574 (+) True G38481
TU45585 lncRNA downstream 102240 726638 ~ 727365 (+) True G38484
XM_034303150.1 mRNA upstream 159296 450594 ~ 464059 (+) True LOC113525486
XM_034303149.1 mRNA upstream 196465 418514 ~ 426890 (+) True LOC117596915
XM_034302589.1 mRNA upstream 252631 360956 ~ 370724 (+) True LOC113525489
XM_034302590.1 mRNA upstream 252631 364203 ~ 370724 (+) False LOC113525489
XM_034302591.1 mRNA upstream 262483 356088 ~ 360872 (+) True LOC117596826
XM_034302588.1 mRNA downstream 695 625093 ~ 632530 (+) True LOC113525482
XM_034303153.1 mRNA downstream 45489 669887 ~ 688786 (+) True LOC113525487
XM_034303156.1 mRNA downstream 73779 698177 ~ 702567 (+) True LOC113525488
XM_034303157.1 mRNA downstream 115697 740095 ~ 744999 (+) True mtap
XM_034303165.1 mRNA downstream 361150 985548 ~ 988804 (+) True LOC117596917
TU45362 other upstream 414457 207459 ~ 208898 (+) False LOC113524725
TU45347 other upstream 417685 201779 ~ 205670 (+) False LOC113524725
XR_004577897.1 other downstream 64716 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 97729 722127 ~ 744984 (+) False mtap
TU45707 other downstream 439574 1063972 ~ 1065331 (+) True G38577
TU45723 other downstream 478422 1102820 ~ 1129382 (+) False coro2a
TU45743 other downstream 541642 1166040 ~ 1168639 (+) False trmo

Expression Profile