Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577809.1 |
| length | 272 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117596831 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 29077310 ~ 29081966 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577853.1 | lncRNA | downstream | 68507 | 29003280 ~ 29008803 (-) | True | LOC117596864 |
| TU64108 | lncRNA | downstream | 579422 | 28496771 ~ 28497888 (-) | True | G54327 |
| TU64103 | lncRNA | downstream | 592065 | 28484982 ~ 28485245 (-) | True | G54324 |
| TU64099 | lncRNA | downstream | 606212 | 28470891 ~ 28471098 (-) | True | G54320 |
| TU64051 | lncRNA | downstream | 647970 | 28427453 ~ 28429340 (-) | True | G54273 |
| TU64569 | lncRNA | upstream | 51914 | 29133880 ~ 29135669 (-) | True | G54775 |
| TU64653 | lncRNA | upstream | 180794 | 29262760 ~ 29263429 (-) | True | G54855 |
| XR_003404254.2 | lncRNA | upstream | 187130 | 29269096 ~ 29270020 (-) | True | LOC113542069 |
| XR_003404243.2 | lncRNA | upstream | 549035 | 29631001 ~ 29639339 (-) | True | LOC113542002 |
| TU64755 | lncRNA | upstream | 549055 | 29631021 ~ 29639350 (-) | False | LOC113542002 |
| XM_026939311.2 | mRNA | downstream | 457285 | 28610623 ~ 28620025 (-) | True | flrt3 |
| XM_026939312.2 | mRNA | downstream | 556481 | 28515778 ~ 28520829 (-) | True | ephx5 |
| XM_026939483.2 | mRNA | downstream | 572033 | 28504100 ~ 28505277 (-) | True | LOC113542138 |
| XM_026939117.2 | mRNA | downstream | 575912 | 28499606 ~ 28501398 (-) | True | LOC113541930 |
| XM_026939251.2 | mRNA | downstream | 580708 | 28494642 ~ 28496602 (-) | True | LOC113542015 |
| XM_034301980.1 | mRNA | upstream | 600579 | 29682545 ~ 29684864 (-) | True | LOC113541985 |
| XM_026939190.2 | mRNA | upstream | 604764 | 29686730 ~ 29695063 (-) | True | zfyve21 |
| XM_026939191.2 | mRNA | upstream | 604764 | 29686730 ~ 29695056 (-) | False | zfyve21 |
| XM_034303164.1 | mRNA | upstream | 691419 | 29773385 ~ 29779069 (-) | True | dact2 |
| XM_026939507.2 | mRNA | upstream | 700297 | 29782263 ~ 29788784 (-) | True | eif3s6ip |
| TU64047 | other | downstream | 641899 | 28433220 ~ 28435411 (-) | True | G54269 |
| TU63465 | other | downstream | 1536011 | 27537776 ~ 27541299 (-) | False | zgc:163080 |
| XR_003404274.1 | other | downstream | 3167191 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
| XR_004577835.1 | other | downstream | 4341423 | 24682246 ~ 24735887 (-) | False | herc4 |
| XR_004577838.1 | other | downstream | 4425463 | 24471703 ~ 24651847 (-) | False | lyst |
| trnae-cuc_11 | other | upstream | 119966 | 29201932 ~ 29202003 (-) | True | trnae-cuc_11 |
| LOC113541988 | other | upstream | 597445 | 29679411 ~ 29681726 (-) | True | LOC113541988 |
| TU65059 | other | upstream | 1029865 | 30111831 ~ 30122655 (-) | True | G55209 |
| TU65057 | other | upstream | 1030068 | 30112034 ~ 30122822 (-) | False | G55209 |
| TU65060 | other | upstream | 1030356 | 30112322 ~ 30122655 (-) | False | G55209 |
