Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577839.1 |
| length | 628 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC117596848 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 7141099 ~ 7142302 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU49679 | lncRNA | downstream | 123694 | 7016765 ~ 7017405 (-) | True | G42008 |
| TU49614 | lncRNA | downstream | 128793 | 7012093 ~ 7012306 (-) | True | G41944 |
| TU49606 | lncRNA | downstream | 199641 | 6941240 ~ 6941458 (-) | True | G41938 |
| TU49467 | lncRNA | downstream | 343479 | 6794579 ~ 6797620 (-) | True | G41809 |
| TU49415 | lncRNA | downstream | 460826 | 6677130 ~ 6680273 (-) | True | G41768 |
| TU49878 | lncRNA | upstream | 171366 | 7313668 ~ 7315596 (-) | True | G42173 |
| TU49892 | lncRNA | upstream | 200165 | 7342467 ~ 7342681 (-) | True | G42179 |
| TU50043 | lncRNA | upstream | 294140 | 7436442 ~ 7438889 (-) | True | G42315 |
| TU50045 | lncRNA | upstream | 296736 | 7439038 ~ 7439236 (-) | False | maml3 |
| TU50091 | lncRNA | upstream | 426069 | 7568371 ~ 7652220 (-) | True | G42361 |
| XM_034302824.1 | mRNA | downstream | 21479 | 7017457 ~ 7119620 (-) | True | gstcd |
| XM_026938787.2 | mRNA | downstream | 135065 | 6942697 ~ 7006034 (-) | False | npnta |
| XM_026933042.2 | mRNA | upstream | 19172 | 7161474 ~ 7204699 (-) | False | lef1 |
| XM_026933026.2 | mRNA | upstream | 19172 | 7161474 ~ 7204699 (-) | True | lef1 |
| XM_026933034.2 | mRNA | upstream | 19172 | 7161474 ~ 7204151 (-) | False | lef1 |
| XM_026934409.2 | mRNA | upstream | 176797 | 7319099 ~ 7324522 (-) | True | LOC113538928 |
| XM_034302882.1 | mRNA | upstream | 177374 | 7319676 ~ 7325006 (-) | False | LOC113538928 |
| XR_004577821.1 | other | downstream | 1321586 | 5756711 ~ 5819513 (-) | False | gab1 |
| TU48529 | other | downstream | 1913176 | 5203706 ~ 5227923 (-) | False | lsm6 |
| TU48528 | other | downstream | 1913176 | 5225030 ~ 5227923 (-) | False | lsm6 |
| XR_004577883.1 | other | downstream | 2531649 | 4545584 ~ 4609450 (-) | False | dclk2a |
| trnah-gug_3 | other | downstream | 4106546 | 3034482 ~ 3034553 (-) | True | trnah-gug_3 |
| XR_004577908.1 | other | upstream | 19172 | 7161474 ~ 7204151 (-) | False | lef1 |
| XR_004577909.1 | other | upstream | 19172 | 7161474 ~ 7204151 (-) | False | lef1 |
| trnam-cau_1 | other | upstream | 1324682 | 8466984 ~ 8467055 (-) | True | trnam-cau_1 |
| trnam-cau_2 | other | upstream | 1325734 | 8468036 ~ 8468107 (-) | True | trnam-cau_2 |
| trnam-cau_3 | other | upstream | 1326769 | 8469071 ~ 8469142 (-) | True | trnam-cau_3 |
