Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577842.1 |
| length | 385 |
| lncRNA type | intronic |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC117596852 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12241609 ~ 12242121 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU52939 | lncRNA | downstream | 220141 | 12010931 ~ 12021468 (-) | False | pwwp2b |
| TU52938 | lncRNA | downstream | 233580 | 12007826 ~ 12008029 (-) | True | G44848 |
| TU52909 | lncRNA | downstream | 327580 | 11912210 ~ 11914029 (-) | True | G44820 |
| TU52906 | lncRNA | downstream | 401787 | 11839452 ~ 11839822 (-) | True | G44818 |
| TU52647 | lncRNA | downstream | 853663 | 11387206 ~ 11387946 (-) | True | G44582 |
| TU53414 | lncRNA | upstream | 48206 | 12290327 ~ 12303541 (-) | True | G45236 |
| TU53441 | lncRNA | upstream | 126392 | 12368513 ~ 12369349 (-) | True | G45249 |
| TU53462 | lncRNA | upstream | 193153 | 12435274 ~ 12435483 (-) | False | nin |
| XR_004577879.1 | lncRNA | upstream | 384925 | 12627046 ~ 12627481 (-) | True | LOC117596889 |
| XR_004577878.1 | lncRNA | upstream | 385556 | 12627677 ~ 12628388 (-) | True | LOC117596888 |
| XM_026942027.2 | mRNA | downstream | 54996 | 12156217 ~ 12186613 (-) | True | srfb |
| XM_026942017.2 | mRNA | downstream | 54997 | 12156217 ~ 12186612 (-) | False | srfb |
| XM_026944921.2 | mRNA | downstream | 89087 | 12144840 ~ 12152522 (-) | True | tmem254 |
| XM_026940033.2 | mRNA | downstream | 211465 | 12021991 ~ 12030144 (-) | True | LOC113542467 |
| XM_026940020.2 | mRNA | downstream | 220204 | 12011395 ~ 12021405 (-) | True | pwwp2b |
| XM_034302790.1 | mRNA | upstream | 49666 | 12291787 ~ 12330928 (-) | False | klc1b |
| XM_034302791.1 | mRNA | upstream | 49666 | 12291787 ~ 12330927 (-) | False | klc1b |
| XM_034302789.1 | mRNA | upstream | 49666 | 12291787 ~ 12330927 (-) | True | klc1b |
| XM_026936938.2 | mRNA | upstream | 49666 | 12291787 ~ 12324307 (-) | False | klc1b |
| XM_034302793.1 | mRNA | upstream | 57076 | 12299197 ~ 12330922 (-) | False | klc1b |
| TU53378 | other | downstream | 89103 | 12144895 ~ 12152506 (-) | False | tmem254 |
| trnag-gcc_1 | other | downstream | 532925 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU51003 | other | downstream | 3012725 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 3387815 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 3387815 | 8849109 ~ 8853794 (-) | False | G42967 |
| TU53492 | other | upstream | 282515 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 289322 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 389692 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
| trnae-cuc_8 | other | upstream | 397131 | 12639252 ~ 12639323 (-) | True | trnae-cuc_8 |
| trnak-cuu_1 | other | upstream | 397409 | 12639530 ~ 12639602 (-) | True | trnak-cuu_1 |
