Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577844.1 |
| length | 1146 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 4 |
| gene id | LOC117596855 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3400795 ~ 3403106 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46198 | lncRNA | upstream | 969708 | 2427812 ~ 2431087 (+) | True | G38962 |
| TU46183 | lncRNA | upstream | 974195 | 2411201 ~ 2426600 (+) | True | G38948 |
| TU46126 | lncRNA | upstream | 1088344 | 2311651 ~ 2312451 (+) | True | G38895 |
| TU46052 | lncRNA | upstream | 1235310 | 2165170 ~ 2165485 (+) | True | G38826 |
| TU46035 | lncRNA | upstream | 1274128 | 2124070 ~ 2126667 (+) | True | G38812 |
| XR_004577906.1 | lncRNA | downstream | 111995 | 3515101 ~ 3525121 (+) | True | LOC117596918 |
| TU47566 | lncRNA | downstream | 111995 | 3515101 ~ 3525093 (+) | False | LOC117596918 |
| TU47719 | lncRNA | downstream | 280237 | 3683343 ~ 3685205 (+) | True | G40287 |
| TU47821 | lncRNA | downstream | 461590 | 3864696 ~ 3865000 (+) | True | G40374 |
| TU48045 | lncRNA | downstream | 727009 | 4130115 ~ 4130322 (+) | True | G40586 |
| XM_026938936.2 | mRNA | upstream | 24679 | 3373213 ~ 3376116 (+) | True | LOC113541773 |
| XM_034302843.1 | mRNA | upstream | 41820 | 3356422 ~ 3358975 (+) | True | LOC117596854 |
| XM_034302844.1 | mRNA | upstream | 43075 | 3356563 ~ 3357720 (+) | False | LOC117596854 |
| XM_026938964.2 | mRNA | upstream | 47617 | 3350885 ~ 3353178 (+) | True | LOC113541782 |
| XM_026938973.2 | mRNA | upstream | 47617 | 3350885 ~ 3353178 (+) | False | LOC113541782 |
| XM_026939299.2 | mRNA | downstream | 31239 | 3434345 ~ 3503120 (+) | False | gpm6ab |
| XM_026939308.2 | mRNA | downstream | 31856 | 3434962 ~ 3503120 (+) | False | gpm6ab |
| XM_026939291.2 | mRNA | downstream | 54422 | 3457528 ~ 3503120 (+) | True | gpm6ab |
| XM_026944828.2 | mRNA | downstream | 169321 | 3572427 ~ 3641748 (+) | True | glra3 |
| XM_026944834.2 | mRNA | downstream | 172366 | 3575472 ~ 3641748 (+) | False | glra3 |
| XR_004577910.1 | other | upstream | 1235011 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 1309489 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45995 | other | upstream | 1309574 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU45994 | other | upstream | 1309954 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45964 | other | upstream | 1403543 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU47789 | other | downstream | 428843 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_003404319.2 | other | downstream | 1860476 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 1915428 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 3800844 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 4246092 | 7649198 ~ 7666033 (+) | False | naa15b |
