Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577851.1 |
| length | 576 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 5 |
| gene id | LOC117596862 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 18087504 ~ 18091613 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU57290 | lncRNA | downstream | 2699 | 18083657 ~ 18084805 (-) | True | G48419 |
| TU57280 | lncRNA | downstream | 40618 | 18037687 ~ 18046886 (-) | True | G48411 |
| TU57216 | lncRNA | downstream | 99873 | 17987422 ~ 17987631 (-) | True | G48368 |
| TU57104 | lncRNA | downstream | 268900 | 17817285 ~ 17818604 (-) | True | G48271 |
| XR_004577884.1 | lncRNA | downstream | 285618 | 17799740 ~ 17801886 (-) | True | LOC117596895 |
| TU57364 | lncRNA | upstream | 75407 | 18167020 ~ 18173182 (-) | False | G48476 |
| TU57365 | lncRNA | upstream | 78412 | 18170025 ~ 18173182 (-) | True | G48476 |
| TU57866 | lncRNA | upstream | 752140 | 18843753 ~ 18844635 (-) | True | G48938 |
| TU57868 | lncRNA | upstream | 761900 | 18853513 ~ 18853713 (-) | True | G48940 |
| TU57878 | lncRNA | upstream | 798950 | 18890563 ~ 18890812 (-) | True | G48947 |
| XM_026939061.2 | mRNA | downstream | 6038 | 18063825 ~ 18081466 (-) | False | ikzf1 |
| XM_026939053.2 | mRNA | downstream | 6038 | 18063825 ~ 18081466 (-) | False | ikzf1 |
| XM_026939048.2 | mRNA | downstream | 6038 | 18063825 ~ 18081466 (-) | False | ikzf1 |
| XM_034302887.1 | mRNA | downstream | 6038 | 18063825 ~ 18081466 (-) | True | ikzf1 |
| XM_026944510.2 | mRNA | downstream | 32607 | 18047425 ~ 18054897 (-) | True | ttl |
| XM_026934615.2 | mRNA | upstream | 16409 | 18108022 ~ 18122718 (-) | True | vwc2 |
| XM_034303057.1 | mRNA | upstream | 36736 | 18128349 ~ 18158184 (-) | False | zgc:110045 |
| XM_034303056.1 | mRNA | upstream | 36736 | 18128349 ~ 18158184 (-) | True | zgc:110045 |
| XM_026941473.2 | mRNA | upstream | 36736 | 18128349 ~ 18138930 (-) | False | zgc:110045 |
| XM_034303058.1 | mRNA | upstream | 38741 | 18130354 ~ 18158184 (-) | False | zgc:110045 |
| TU56951 | other | downstream | 426120 | 17657581 ~ 17661384 (-) | False | col13a1 |
| XR_004577786.1 | other | downstream | 513082 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| XR_004577787.1 | other | downstream | 513082 | 17562332 ~ 17574422 (-) | False | LOC113538666 |
| TU56907 | other | downstream | 611443 | 17471187 ~ 17476061 (-) | True | cisd1 |
| XR_004577772.1 | other | downstream | 1104775 | 16979131 ~ 16982729 (-) | False | morn4 |
| TU57664 | other | upstream | 238755 | 18330368 ~ 18613401 (-) | True | lrmda |
| TU58169 | other | upstream | 1224874 | 19316487 ~ 19319733 (-) | True | G49195 |
| XR_004577815.1 | other | upstream | 1544225 | 19635838 ~ 19667661 (-) | False | atrn |
| TU58944 | other | upstream | 2266321 | 20357934 ~ 20369097 (-) | False | gng2 |
| TU58943 | other | upstream | 2266375 | 20357988 ~ 20369097 (-) | False | gng2 |
