RNA id: XR_004577852.1


Basic Information

Item Value
RNA id XR_004577852.1
length 8665
lncRNA type intronic
GC content 0.41
exon number 2
gene id LOC117596863
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24260352 ~ 24269139 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacaaatattacACTACACAATTGACACAAAGACCATTTGACACACTTCATGAAGGTAAGAGTTGGTGTATTTATTcagattttggaatttttcatttttattgtgttgtatgcttttactttactttgttactttcacctgaaaataaactataatatggtgtaatacaaaaatagaattaataacatagtttattatgtttattagaCCAATGTGTCATTGGACACAACCATTATCAGATTAGAAGCAGTAATCtgttacatttacaacatttagcAGGTGCCCTTAACCAGAACAACTTACAGAACCACTTTGTAATCTTTAGCAAAAATATATCCTtgtgctagttcactaggtcaagGACTAAGGGTACCATCAGCCCTAAATCTCTGTTGGAGAGGTTAGTATGgcataaaaagaagaaagtcaAGAATGATATGTATACAGTACACAGATCGTACactcccctctgaaagtattggaatggcaaagcCAGTTCTTCTATACACTAatgacatttgagtttgagatcaaacaATGAATATGAAacgatggatcagaatttcagctttcatttcctgatatttaaatCCTGAGTCCTCTTTAAAAGACCTGAACTCAGACCCCTTGAAGTGGACCAAGAGGTGAAGCAAGTGAAAAAGGACCCAGTTCTCTTTATGTTCACACTGTCCCTGTTCCTGAATGAGAACTTGGATCCTTTTTTGGTCCACTTAAGCATTAATATGGTCTCAGACATCTTTGTGTTTATACTGTTGCGTTTTGGGTCCTAGGCCTCTTGCAACGCTGTGCATTGTGGGTACAGCAATATTATGCAAGATGGCTGACCCTAAACTTGTGCTAATTGTCCTgtacaacatgttttttaaattacaaaagagaaagagaacacaataaaaaaaatgaaagaaatcaaaacaaacacaacaaacgaATGCAGAGGAGAAGGACAAGAAAAATATGGTGAAAAAACTCTGCTGAAGCAGCATTATTTATCTCTGGGGCTTCACCTTATGATGCTGACTTAAGAGATGATGACAATTGAGCTATCTCCTCAAAGatcCTGTTGTACCAGAAATCAATCACATCTTTGGTGGGAGAACACTGAGTCTTTGAAGTTTCTGGAACAGAAACTTCAGGATGAACAGGGAGACATTCCTGATTATGTGCAATGAGCTAAGACTGCATCCCTATTCTTGCGTTATAGCACTGTAGCACACATCCATCtgtataattatgtttattttccttGTGTTCCTTgaattatgtttgtttattgtaattTCTAGTAGtataaaatgtctgtttttttgctcattttaagtgTTTGCTTTGTAAAAACCTACTGTATGTTAAATATTCTGCCCTGTGCTTAAGGAAACCAGATACGCGACGTCATTAAGCCAACTAAATCATGAAAATAATGGCATAACGGTTCTATGAGCAACTAAATAGGTAAAGCAAGTTTGCAATGAACGTACCATTATCATCCTCCCTCTACAACATATATTGGGTTCACGCAGGGGCTTGTACCAAGAATTTTGTCTAACAAATCATAAAGAGGCCACTTGACATTGGCTGACTGTCCTCTAGATCACAGTTTATCTCGCATGGCCATATATTTCTACTGTAATTTTTTGCACTTTAACCCTGCCCTGCAGGGCACTCTGGTTAAATTCTTTGTCTTTCaattttgatgaaaattgaATAAACACTTTTGAATTTCTGTGGGTGGTTGATAGTTGTTTCTTAATATAGACCTTCTTCCAAATTTGGAGGAGTGCAGCCGTTTCCTCATCTGTCCATAGCATCCCTCTTCCAGCAGAAGCAGCTATGTTGAATAGAGCGATTTGTACAGAGGCCTGTACGAAAGTTCACAAATGGAAAAATCGAGTGAACCTGGAGCGATTTGTGTtcacaatgtacatttttagGGAACTGTACCATAACCTGAAAGCAAACCAAACTCTGATCACCTCCCAAGATGGTCTCAGTTCAGTTTGCTTTAAAATCGTTTGGAGTGTTCACACAAGCCAAAAATCCAGCGAACTGTGCTCAGACACCTGAAAAGCTGGAAGTGTGAAAACACTTGTTAGGAATTCTTAACTGCAATTGCATCCGTTTCCACTCGCCATTCGTGACAGAATACTTCACCATTACAATGGATGCAGCAGGAAGGCGAGAGGGGCGTAACCCCAGGATGACCATGCCAGCCCTCGACTTGATCCATTTTTCTCAGTGGACTTTCATATATTCCCTGGAACCCTTTGATGGCTTTTCAGTTTACCCAGAATGCTGCCTGCTGCAGTGCCAGTTATATTTTGGGAGCCTGGTGGACCCCAAGCCTAATGAGAAGCAGTGGTTGGAGTTCTTGTTGTCCCGGCTCGTCTGCCCAGCCCACCAGTGGGCGGAGCTCCTGATTGCCACAGGAACCAGAGGCCTTAGCAATGTAGCCGAGATTGTCAGCTTATTAAGAAAGGTGTTCGGGTGTCCTAAGTTTAACCCTGACCTTGACAATTTTTTGTGGAGGGCCAGACTGACGGCTGAACCCGCTCGGCCTTTTATGTCCTGCGTTTGCCTGAGGTCGATGGCATGGTCTCCCAAGTCCTGCTCTTGCTAGAGACCAATGGCACGGCCTCCCAAGTCCTGCACCTATCTGAGACTGACGAGGCAGCTACCCAAGCCCAGCTCCTGTCTGAGGCCATCGGCTCGGCCTCCCAAGACCTGCTTACATCTCAGGCCAACAGGGCAGTCTCCCAAGACCTGCTCACACCAGAGTCCGACAGAGAAGCCTCCCAAGCCTTGTTCCCAGCTCTGCCACATGACCTTGGCAAGCCTGTCCCAGCCCTGCAACCTGACCCTGTCAAGCCTATTTTGTTatagtggcacctgtcaaggggtgggatatattaggcagcaagtgaccagtcagttctcaaaggtGATGtattggaaacaggaaaaatgggcaagcgtaacgATCTGAGTggctttgacaagggccaaattgtgattgCTAGATGACTGGGCCAGAGCATCTTCAAAGTGGCAGGACTTTGGGGTGTTCCTCAtatagtacctaccaaaagtggttcaaggaaggacaaccggtgaaccagtgacagggtcatgagtgcccaaggctcactgatgagTGTGGGGAGCGAGGGCTAGTCAGTCTCATCTGATCCCACACTGTAGGAccaattgctgaaaaagttaatggtGGTTATGataggtgtcagaacacaccatGTGCAGCTTGGTGTGTATGGGGATGTGTAGCCCCAGACCAGTCAGACTGTCCAACCTGACCCCTATCCACCACGGAAAGCACCTACAAGGGGcgtgtgagcatcagaactggaccagggagcaatggaagaaggtggcctggtctgatgaatcatgttttcttttacatcttgtggatggccgggtgcgtgtaCATCGCTTACCAGGGGAAGAAAtgacaccaggatgcactatggaaaggcaagctggtggagccagtgtgatgttctgggcaatgttctgctgggaaaccttgggtcctgacaTTAacgtggatgttactttgacaaataccacctacctaaacgtTGTTGccgaccaagtacaccccttcgtGGCAATGGTATTCACTAAGTGGCCActttcagcagaataatgtgctttgccacactgcaaaaattgtttaggaatggtttaaggaacatgacaaagagttcaaggtgttgactcagcctccagattccccagatctcaatccgatctaGCATCTATGGGATGTGCTGGTCAAACAAGTCTGAtgcatggaggccccacctcgcaacttataggacttaaaggatctgctgctaacatcttggtgctaGATTCAACAGCACACCATCAGAGGTCTTGTAGCGTACATGCCTCAacggatcagagctgttttggcagcacaaggcgGACTCAATGATACTCCTGTAGAAGCTGGTAAGGATCGCTGATCACATACCTGCTTTTTTCAACTTTAAGGAGTCGAGGTGTTGGTGTGCCTTTTTACCTAAAAGTGAGAAGTTTGAATTTGCACACACTGAACTTTTTGTTGTTACTACACGTAACATAACTCCATGTTTTGTACATCTgttttttgcacattcctgtacaaatatttcttatttcttaattttaatttgtttactgAAATGCTCAGTCTAAggaggagtaggccaggttttcatttcactgcatgttatgtactgtacataactgtgtatgtgacaaataaaatcttgaatcttttaGTTAGGAAGAATATGCAGTTTATCATACATTTTTTGACTTTATCCCGGTATCTAGCCAGATAGACAGCGTTAAACAAAATTTCATGCTCATCAGGTCGCATAATTTAGTGGGAAATGTATAGAATTGattctgtctttaaaaaaaaaaaaaaaaagtgacgtAAACATGGGAATCCATCAAAATTTCTCCAAATCTGCACAATTTTGGACTAAAAGCCCTAATGGACGTTGTTTAGTGAAGCCCTGTGatcacaaataaacagaaacagatgtGATTGTCTCGTTTTTTCATTCGAAATATCAATAACTACCAGTTTGATTTTACATGTTTGATGTGTACTCCCGACAGAAATTATGAAATTGCTGTCACTGTAATTGTCTTTATCATAAACAGTGGCCAAATGTCAAAGCTAGAGTCCTAAATCTTTCTAATGATTTACACTTGGTCAAGATTAAATAAGATTGTCATGGTAATAGCGTGGAGTGAATGTAAACAGCAACAATCAACAGTTAAGAGGTTAACATTACTTACCTCAAATGATGGGTCCTCAAAATGCTTTGATGTCTTGGATGCAGCCAGGTGGTTCCAGAGCATATGTAAGCATGCTCGTAACTGAAATAAGAACAAATATCAGGGCATGTCAAAACATTGGTGAGGGGGAGCAGTCTGAGCGATGCTTTGCTGAAGAAACGGCGCAAAACAGAGATCGTTTATGTTATTATGagaagtgtaaaaaaatattttcggTTCATTATGAAACTGGCAGGACAAATTAGACGGCAGATATTATTGGACGATGGTCGTTAAAGCATGTGGCTGGAGATTTTTTTGGTACCAGAATGATTGTCGTATTCTTGAcacaattgggaacaacagctaaaaatgtcagtgaataCTTAAGTAGGTCTTGTGGCTTTCCTGGGTTCATCTTTGAGAGTTCTTTTCACATTCATTGTGGTTAAAGGACTCAGATCGGGCATAAAATTCATTTAACcctcagtagtctcaggtgttTTTGGATCCTGGTGATTTTTTGACAAAGCCTGACAATTGTTCTTATTTTAGTAACTTATAGCACATTAATGGCAAAAGTCCCATTACACTATATTCAGCTCAAATTGTGCTTCAATAATATGTGAGCAACGTGAATGTACACAATGAAAATTTAAACTtggttagtaaaaaaaaaatttaaagacaCTCAGATAGGGCCATAGAACatatactaaatatattttcatatataacaatgcattgatttcatttttgtgtgacactttttgttttagaaaggCTGTATGGCAGGGACAGTCAATGGCCATGAATATTGATGTCTTTCACACCTGGGGAGATAACGATCCACCCCTTAATGGGTCTGTCAAGGTGGAATGCCACTGtggaaactgaaaaaaataatttgaggAGACTaaaagaaataatgttttttgtttgtagtttatttacaacacagtgtataatataatcaaaatataaaaaatgagagTCAAAGGCACATTTTTGAGCATACAGTTTtgaacacacagtcacacacctTCGTGCCATTCCTGGGAAGTAGTTCCTGGTTAACTGAAGCCACAAGTGAACGTCACATGCCTGGCATTTCCAAGGTGTTTCTTGCCATGCACTGCTTTGCAATGCACACAGATCCAGTGACCAGCAGTGGCAATATTCCTGACATCTGAGCTCAGCTCAACTCCTGGAACCAACATATGGTCACTACTGGACTGTTTTGGTACTACTTTCTGTAACACGCCACAGAGCTCTGCAGTAAGCTGTTGGGAGCTTTGGACTTGTGTAGAAATTATCCATGTACACAAAAGAGACAATGTCCAAAAGAGATGTCACATCATAATATGATAGTCCATGGCCTGTGGGAATGTTGTTCTTTCCTGTGTAGACAGAAAAGTCCGCAGTGTATCCATTTGATGAATCCGCAAGGACAAACAACTTGAAGCCCCACTTGGTTGGCTTGGCTTTCATATACTGTGTCGTTCCCATGTTTGATTTGCATCCCACCATTCTTTCATTCACAGCAAAATTTCTTTTAGGATGACAGATGGCATTCTTTTAGGATGATAGATGACAGTCAGTGAGGGGTTTGACCCTGAAAAGACAGTCATGTTCATCTGTGCCCCTCTTTCTGTCATTCTCCTTGTCTGTGTCTGGGTGACTCATGTACACATTCCATGAAATTATGTGGTATCTGTCCCTTGACATAACTGTGGAAGGAAAATGCACAGAGAAAAGACTGCCCTAGTGCCAGTAGTCAGTGATGGAGCTCACCTTCCCCATATAGAATATTAGTGTAGTCCAGTGTAGCAGTATAGCTCGTTGATGCTGACATTTGTCCATTTGTACTTGTGCCCTTTGCAATTGCCCTGGCAGCCTGAGCATTTGTGTTGTGACACAGAGTTGACACAGCACTCTCAGAGAAAAACAGTTTGAAGAGACTCAGGGGAGAGTGTGAGTCAGCAGACCTAAGCTGTTGTCCAGGTTCCCATGTGGGCAGGAATCTGAGTCTGTGGAACCATGTCAACACAAGTCTCTGTTTTCCATGACAGTGGACTGCCTGTAGCTTACTTGCTTGTTTGTCTTGGCTCTCTTTGCAACAGGTATCTGGTCACTGTCATTCTCACATCTCACAAAAAGTGAGGAAATAATTGAGCATGCTACTAACAGGATCAAAGAAACTATATTATCACTAATgttactaatactaatattgTCCctcataacaaaaaaaaaaagacaatttttgtaatgccatacatgcacatacacttTATGTATTATCACATAGaatgtaaacaaaattaaactaACATCTGTAAAATAGCAATTAAATGTGTACTTACTCAGTATGATTCTCGCATTGATGGGGGCGTTTACCATGTTTGTATGGCTCGCCCAGATCATTAACGTATGAATAGCTCACTCTGCAGGTGGGTGTGTCTAGGTCAGTGCTAATGAGCTGAGACAGAAAAACTGCACCTGTCATTAGTTTCATGCGCATGAcataatcataaaatatttgttttggcTCTATAttggtttatttaaaagtaaacatttcaatataattCAATATAATTATATGCTGAGTTTCGATTTATTTTTGTGACGTGCTCCAGTAGGGCTGCACGATTAATCGTATTTTAACTGCAGTCACGATTTCTGTGATTAATTAAGCATAATCATCTGCAATATTGATGTGTTATTAAGCAGAAAATGTCAGCCTGCTAAGATTGCAAATTGTTTATTCTTATGGGCCGAGTCTCTGATGATAAACCAAATCACAAGTCACAATCACAAGTTATTTTTCACCTCGACTGATCTGTTGCTCTCTGGAAGTTCGCTAATGACCAAtgagcatttcatttttaagcaCGCTTTGAAATATGGTGTCACAGAAGTTCGCGGCTTCGTGTGCACAGCACAGCAGTGGCAGATATGAAAGCATACAGGCCTTCAGCTTGactgaacaaacaaaatggCAGAGCAACAAGAGGAAGGTGAGGGGCATACATTAGTTCCTAAAAAGGTGTCATCCTCCATTGTTTGAAGTATTTCAGGTTTAGAGAAAGTGATGTTGACCAGGTGCAAGTACTATGCAAAGTGTGCTTCCGTGCTGTATCAGTGCTGCTGAAGGTAACACAACAAACCTCATCAACCACCTGAAAAGCCAACATAAAAACAGTATCAAGAATGTCAAAGGTTGAAGACACAAAAAGTTTTAACCACACAAAATTCCCAGCTTTCCCCAACACAGACAGCAGTAATGGGGATTTTGCTCAATGCAACACTATATTCGCCTGGCTCACAAAGACACATAGAAATAACGGAGGCAATCACATTTCATTTAGCCAAGGATATGTGCCCAATAAGCACAGTAAGGAACgaggggtttaaaaaaatgatctgCACACTTGACAAAAGATACATGATACCCTCATGCAACTATTCTTCAAAAGTTGGTCTGTCTGAGCTGTATGCTAAATGTAGACtggaaatagagagagaaatttgCGCTGTTGAATATTTTGCTGCCACAACTGATTTGTGGTCAAGTAGAACTGCGGAACCGTACCTGAGCCTGACTACTCATTATATTGACAGTGAGTTTGAAATGAAGAGCGAATGTATGCAATCTCCATTTTTCCCACAAGACCATACAGCAGAATCTATTGCAACGGGCCTCAAAAAAGTGATTTCTGCATGGGGTTTGCTTGAGGAAAGACTCATCTGCATTACAACGGACAATGCAGCTAATATGATCAGGGCAGCCTCTCTGAATACCTGGACGAGGCTACATTGCTTTGGACATAGACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61407 lncRNA downstream 123557 24136506 ~ 24136795 (-) True G51943
TU61381 lncRNA downstream 130501 24108351 ~ 24129851 (-) False LOC113545393
TU61365 lncRNA downstream 254667 24005388 ~ 24005685 (-) True G51903
TU61346 lncRNA downstream 314007 23944851 ~ 23946345 (-) True G51887
TU61335 lncRNA downstream 378017 23882027 ~ 23882335 (-) True G51876
TU61589 lncRNA upstream 118242 24387381 ~ 24392746 (-) True G52097
TU61566 lncRNA upstream 146180 24415319 ~ 24416426 (-) True G52076
TU61647 lncRNA upstream 279532 24548671 ~ 24605747 (-) True G52147
TU61654 lncRNA upstream 294817 24563956 ~ 24564286 (-) True G52154
TU61657 lncRNA upstream 372957 24642096 ~ 24642916 (-) True G52157
XM_034301784.1 mRNA downstream 127869 24109476 ~ 24132483 (-) True LOC113545393
XM_034302677.1 mRNA downstream 220253 24016896 ~ 24040099 (-) True mlh1
XM_026936389.2 mRNA downstream 392822 23862719 ~ 23867530 (-) True mrpl14
XM_026939232.2 mRNA upstream 182847 24451986 ~ 24651847 (-) False lyst
XM_026939233.2 mRNA upstream 182847 24451986 ~ 24651847 (-) False lyst
XM_026939235.2 mRNA upstream 182847 24451986 ~ 24651847 (-) False lyst
XM_026939234.2 mRNA upstream 182847 24451986 ~ 24651847 (-) False lyst
XM_026939231.2 mRNA upstream 182847 24451986 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 220252 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 806135 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 1471569 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 1471569 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 2158969 22035285 ~ 22101383 (-) False LOC113540944
XR_003404244.2 other upstream 183980 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 202564 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 413107 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 1640879 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 3268637 27537776 ~ 27541299 (-) False zgc:163080

Expression Profile