RNA id: XR_004577858.1


Basic Information

Item Value
RNA id XR_004577858.1
length 3654
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC117596869
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22165739 ~ 22177331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACATACTCTTGTGCCAGTCTCTGTTGGTTTTCAactactcaacacacactccacacaggcCTCACTTATCTTCAGCACTGGAGCATAGCAGGCCTGCTCGACTGTGTTGGCACCTACAGCAGCATTCCAGCAGATCCTCCCCACCAATGAATGCAGTGCTGTAGAGGAGGAGCTCACATGGGTAAGATACAACCAAGAACATCTGTGGTAAGGAAAAAAGGCAAGTAAATGTTTTGTATGTCagcattcattattatttatgaagtGCAGAGTTTTACTCAGATGTAAGGGTTTAAATTTGAGCCGTTGTTACTGCTGAGAGGAGACATGACATTGAAATGGGTCAGGCTGACGAGAGCGGGGCATCAGAGCacaagagagaaagggagagagctTTTCACAATGAGCTCCTGTTAACTGAGGACACAAAGAAGTTTGAAGGGCAAATCCTGGACACCTACTAGCTATGGAAATGCTACTGACCCCACCCCTTCTACCATTGTATGATAATTCAGGTTGGTGAAACTTCTTTGGTGCTGCTTAGCTGTAGCTATGATTCCTTCCATCCTTCTAATTTTCATAATTGTGCAAGTTGTCATGGTTTCTCCCTTTGCATTAAGGTTCCCATagtgattttgtttgttttctgtccTAGTCCTGTCTCTGCTCCTGTCCTGTCATTGACTTGTTGGCTGATTGTGTTCACCAGATTAATGTTAGTCCTTgattcatttgtctttttttatcctCTATGTCATTGTTTGTTGTGAGGTATCATGCTCTTATATAGGTAAGTCTGAGGCTTGTTTTATTGTATCCTTGTTTGTTCTGGTTTTTAACTCTTGCCTGTGTTTTGACATTGATTATACCTGTAGATTTATTAGATttgcctgcctgtctgtgtgttgaCCCCTGCTATTGAATTTGATTATGATTCTTGGATTTGCCAAAGTAAGGTATATACTGAGTTTATGCACTTGTGTCCtgttcaagttttttttttgtcatgtgcATAAAGAGTGCTGTAAGCATCtatatacaatgaaattcttgtgcGACAGTGCATGCTTCTACAAACAAGCAGTGCAAATATGATAAGTAAACTCTTACAAactagtacaaaaaaaaaacaaactgtaaacactgaacacaaacaaattttaaatgtactcaactagtaaaaataataataaactgtaaacattgtaaatattGCATGCAGTCAAAAAGTGGCACAGTGGGGGACACATTCTCACACAAATGTCAACAGAATATATTCTTCTATAACATTATCTGAAGTAATTCCAAAATATTTGGTcacacagttagctagctatccaGATGAAATTTGTCACCATTAGGCATTATGCTTATTAGCCTATTTCAAGTGAATGGATGAAATTTACTAACCTTGATCAGCAatgtcttctgtttttttagCTAATTACATTAAGCACTAATGATAGAAACATATCAATCCATGTCatgtaataacattttcatcaaatCATTATTGAGAAGTCTATAATTACAGTGAATAGAACTATAAATATTCCCACATTGTTGCACCTATGGAAGACACAAAGGTCCCAAGCCTCATAAATCTTAATTTAACTCCTTCCCATGAACTACAATGCTCAGTTATTATATCAAATATGTTTCAAtggaaaaaaagtaatttaatgtaatttaatgtatttttcaaCCCAGTCAAATTAGACTAAAATGCTGAGAATAGAATTGTACGTGACAGATCAGAGAGCAAATCAGTGAAATAGTCAGACAGAACATAAAGCAAATAAAGGAATGCACACAGTTTCCTCTTCACAAAAGGAACCAGCATTGTGTTGAGGCTGTTTATAACAAAGGAGTGCTTGTTTGTTGAACACCAGCATGGATGTGTGCTGAGCAATGCTCAAAAGagcttttatttcctctctcttaTTCATCCCTGTGTGCTGTCACTTTTGTTGTGTGAAAAGCAAATGCTCACTCATATCACAGTCAGCCCTGGAATGAGATTGGAAAACCCCAAATCTTGTGTGGCACGAAAGAGCTGGGCGCTAGTTCTGATACGGGCGAATGATTCTTCACAAGAACCTAATCAGTACAGGATCAAGGCGTGGGTGGCACAGGACTGTACCCAGAGCCTATGGCCATGCCACCCAGAGAGAGGTTATCTGAGTTGCCAGGAAACTGGGAAAAGCTTATCAGAGGAATGTGAGTTCGCAGGAATAGGGCACCTGGAGGTCAGAGGTCCTGAAGCTGTATAGCCGTCTGCTTAGTGCTAATTGACCCTTCTCGGATCTCCTCTTATCTCCAGCTCTTAAGAGTGGGAACACTGACTCACAACAAGGTCACTTCCTACTCAAGAAGCTGTTCCATGGACATTTTTTACCTGAGTGTGAAAagcagtgtgtaatgtattcATCGTATATGCGTATATTTGTATATGCAGACATCTCTACAGAATGTAAATTTTACTGTAAGCTCTTACAAATGACTTTACCAACTTATGCTCCTTTACCTTTCCATGCTTGCTATCCTGCTATTGCatgggaaatttttttttaatgattaagaGTGAGAGTTTCATTGGTGTTTAGAAGGTTAAGATGATAGGTAACATTGTGTATGTTGCATAATGTAGTAGCTTGGTAACTAACCACCACTGCAGGTATGtttttatatgcattttaatgcacacTACAATACTACTATGTGGTCTAAGAGTTTAAGGATCTAAAATGCAATTAATAATGTATGTGGACAGAAGTGTAGTTATTGCTCTGCCTCTAGGCTGTTTTATTGCAGTGTGAAGGCCCTCACCTGGGGAGCAGGCAGCATTGCATCACCACAGTTGCTACAGGTCTAGACGTAAGCCATCGTTCTCATCCATCAGCACAATGATAAGTCTTGATTCAGCCAGGTGCTTCATCCACAAAGCCATGCCGCTGCTTTGTGCCAAGCTGCACTGCCTTGGTTTTAGGTTATAGAGTTCATTAGTTTCCAAGACATCACAGGTGTTTtgaacacgcacacacgcacacacaacacacacacacacacacacacacacacacaatttaaacaCCCTTATTGGTGTTTGCTTACAGTTCAGTGTTTATACAGTTTCATGTTTAGTAGAATCTTCTAGCAACTGCAAGTTAATTTCCACTTTCAGAAACTTAACAATTAAACCATTAATTAAACCATGAATTAAATCCATTAATCCCAGCAGTTACTGTTTGAACAGACTCTCAGAGTTATCCACCTGCAGCAGTGGGCTGTTTCCCATGGCCTGCAGCAGACAAGCTTATCTGTCCTCTACCATCTGAATGGAGCTGAGGGGTCTATGTTTGCGTAAGGCCAGAGGACAAAGAGGGGGTCGGGACGCTCAAGCAGGTCGGCGTTTGATCATCCCATCATGCCTTCTCATGCATGAGGGAGCCGCTCTGGCACCAGAAAAAGGCCGCTCTTCATTTTGGTTCAGCGAACAGCAGCCTTTCTGCAGTCAGAACGAGTAGTCTGCAAAGCCTGAGAGCAATTACAGCAGAAGGacttaaataacaaaatagacTATGCACCATGGAGCTCAGACCATGACTCTGCCTTGAAGCAATAAAGGAAACTGAATAGTCTATAACTTCA

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577862.1 lncRNA downstream 1315 22153348 ~ 22164424 (-) False LOC113538981
XR_004577861.1 lncRNA downstream 1315 22153348 ~ 22164424 (-) True LOC113538981
TU60351 lncRNA downstream 106418 22058153 ~ 22059321 (-) True G51053
TU60333 lncRNA downstream 130577 22034943 ~ 22035162 (-) True G51050
TU60104 lncRNA downstream 161967 22001547 ~ 22003772 (-) False LOC113544581
TU60485 lncRNA upstream 366896 22544227 ~ 22546490 (-) True G51169
TU60484 lncRNA upstream 388468 22565799 ~ 22566527 (-) False LOC113541574
TU60626 lncRNA upstream 428216 22605547 ~ 22608037 (-) True G51276
TU60643 lncRNA upstream 470019 22647350 ~ 22743272 (-) True G51289
TU60768 lncRNA upstream 712728 22890059 ~ 22890274 (-) True G51389
XM_034301397.1 mRNA downstream 42090 22035832 ~ 22123649 (-) True LOC113540944
XM_034301391.1 mRNA downstream 80235 22035832 ~ 22085504 (-) False LOC113540944
XM_034301408.1 mRNA downstream 80236 22035832 ~ 22085503 (-) False LOC113540944
XM_034301384.1 mRNA downstream 80236 22035832 ~ 22085503 (-) False LOC113540944
XM_026944078.2 mRNA downstream 254946 21908981 ~ 21910793 (-) True LOC113544981
XM_026934474.2 mRNA upstream 2816 22180147 ~ 22204975 (-) True pkdcca
XM_034302709.1 mRNA upstream 89365 22266696 ~ 22299362 (-) True ubr2
XM_034302710.1 mRNA upstream 89365 22266696 ~ 22299362 (-) False ubr2
XM_034302711.1 mRNA upstream 89365 22266696 ~ 22299362 (-) False ubr2
XM_034302708.1 mRNA upstream 89365 22266696 ~ 22299362 (-) False ubr2
TU60345 other downstream 64356 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 215550 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 269462 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 551472 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 1796310 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 597024 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 597024 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 1270577 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1839933 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 2275788 24453119 ~ 24651847 (-) False lyst

Expression Profile