RNA id: XR_004577862.1


Basic Information

Item Value
RNA id XR_004577862.1
length 4305
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id LOC113538981
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22153348 ~ 22164424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgatcttctggaattttctcagagtctctacagtttacacagaatggtgcaaaaaacaaaaaacatcaagtgAACAGCAGTTCTGCAAGCAGAAGCAtgttgttgatgaaagaggagAATGCACAGACAGGTTTGAGCTGATAGGAAGGTTACGGCAACTCTTTattagcagaagaccacatcataGTCCAGTcttgtcagctaagaacagtaatctgaggctacagtgggcacaggcacctggtctttttcaactgctcagttttttaaacatgtaaacaatATAATAGCTGTCAAAACACCAAATCAAAATCAGGTCTACTTCCTCCCTGAGCATGTCCTCAATAACCTGCATTTTGCAGCTATTTTCATTGTGTCTCTTTAGcctatagccaaaagtttgcaccctCACGCATATGCCGTCAGGGGTTAAAATGCAATTTGAAAGATGGTTTAACTCTGACAGTGATGAGGGCAGAATCTGCAGTTTCAATTAGATCACATGCCAcatatagaaaaaaagaattaccAAATTGTTACATTAAACAAATCAGCTGTGACATATTGATTGAAATAACATGGCaacttaaacatttttaatagaaTATTGCATGTGTTTGTTTGGTGGATTTCAATTAATTTACTTAGCTAGTGGTTTCCACACATCTAGCATCAAATCTAGGTTCACAAGATCAGATTACACTATGGACAAGCCAACTCACCTAATCACCAAGCCAACAGGCTTgctacatttacatatacagaCAAGATGAGTACTTAATTAAAGGTAAGATCACATAGATTATTATAAGTTTGATTAGATGTACATGGACAGTTAGCTAACCATCACTGTTAAAATCCAAAAGTGATTTTGAGCATTTCCATTCCCGCCTCTGGGTGTTCACGCATGTCGCATCACTATGGACAGTAACCTGGATGACATCTGTTAAAGCTGAAACACTgctcttactttttttttacttgttaaaCACGATTGGACCTTATTGTTTTTGTGATGCAGTGACTAAGAAGTGGGTTCCTGCTCTCCAACACACTGCAGGTACAATCAGAAAACCAGTGGTGATGGGGAGCTGTTTTGGATTGTTCTGACTCACTTTAACTCATGTGTAGCACGGATGGACAACATCAACTCTGAAACagatatttgaaaatataaacaggACATCCTTAAAAGTTGTTTTACAGGTAACTATGTCGACATGGTGAACTTGAAATTGGCATTCCTGAATTTAGATCTTTTTCTACGAACATTACAAGGGTGACGTGTATGATCATACACTGACAATGGTCTAACCaggcaaaaatattttgtatttatgtaaGTTTATACCCtactggatttttaaaaaaatgttatctcACACCCAATTGGTCAAGTTCAACAAGGCTCAGTTCAACAATTTTTTCCTTGTTACATTCACTCTGTTGTCGTGTCATTGTTGGCTGTGGCTTTAAATATAAACTTGAACAGCATTAATTACATGACTTATGCCATGTGCCCATGTTGAGTGATTTCCTCCACTCTCCCCCTGATGCCGCTCCATACTGAGGCCCAGACCCTCTCACAGCAACCCTTGAACAGAGCGgcagcagttgtgtgtgtgagttgagGGATTGTTTTCAATACCGGTGAGTTTCTGGCTGGCGCTGCTTTGGCCCAAGCACAGACCCTGTGGCATGATGGATGAGGTTCTGAAAGCTCTCGCCTCGCTGCACATAAGGGTCTGTTAGCTACGTGGTGCcccctcacactcacacacactttcttcagCTGGATGATCAGATTGTGTTCCTTTACAAGGCTCACTTCTCCACTTCAgcatgagccttgggcacccagtTGATGCCAATGTACATAAATGGAAAGACATCTACCGTCGAGGCATGATTTGGCTGCTGCACTCCACTGGCTGCCACGCTTCCTTTCACATCCCTGTCTCTGACCAGCAGTACAAATCCCAGGAAGTGGAGGACAGGAAGTGACCTCCTGAGAAGGAAATAAGACCCACTCATCCTGCAGAGTGCTCCCTCTGTCTGAACACCAAGTCTTCCTGTCTCCAACCACTACTGAGACCCTATGCAAGAGTGAGGAGTTGACAGAGAAGGCAgcatggagtgtGGCTCAGGACAGTCCAGCTCTGTTGCTGTGGTGACAGCTAGAGGAAGAACAGACATGGAGATTGAGGCTGGCTCCACCACCCTgctctaccacacacacacacacacacacacacaaatgtcttACTATCCTTAAGAGGACCTttcattgacataattattaattattaacaggaaattaatgctatgcctacacctaaatctaactctAACTTTAATCTCAGTAACCAGTAGGGAatctttttgctcttttcttttttttttttttttctattttttctttttttcaagctGAAGtatttttgtgcaaaaaaagttCAGCTAAACGTCCCGGCAAGGTCCAAATTGTCAAGCGAGGACTGAAATCAAAGCCTGAGAAAGTAGAACAGCAGTGATGTAGAAGCAAGTTTAtgggtttaaaaaagaaaaaaaaaatcaacagagaAGGACAACAAGAACTTCagctttttttctattttctagaCATcccagtaaacaggctaactaCAAAATGGTATGATagtaagtaaacaaaaacacagatctAGCTTAAACCAGAATAGCTTTCAGCTCACATTGGTTTAATGTTCTCTGAACATTAAGCAAATGTCGTTTTATATTTAAGTGAAATGTAACAAAAGACAAGACTATGGTGAATATTATTCTTCATCTATATACAAGGAATTCAAACAGAACTTGTGTGACCAAGGCTTTTCAGTCAGAAAACTACTGTCTTTGATTCCTACTGAATGGATTTAAGaaaatttaagaaaagaaaacacttttATTAAGAAAGCAAGACTGTACATAAAATAATTCAACTGCTGACTACAAACTAAAATGAATTTAGGAATCATGCCCAAAAAGGTAATGGGGTATATTTATCATAGGCTGTTTTATGAGCATGTCTAGAGTTCTTcatagacaaaataaaatgacctTTTCCATAGAGAGGATATCAAAGGTTTCATTCATCAGTCACATGTATATATCCTCTCTGTGTGGTTGAGCAGTTCAGCATACACTGTGTTCCTTACTTCAAAGCCCCGAAACACCAAGGCACTTTTGATCATGTTATATAACTTATTGTATATGACAGATGGGCATGGGAGTGGTAACTGGAAAACTTTGCCATAAAGTGTCGTCagttataattatacagcagtgaaataataatgctaattatACGGCAGTGAATTGAAGTCATTTGGGCAGATGTTCTGCCCTCTGCTGGTTATGAATGTGGTTTCACTAATGTTAACAACCGCTGTGTGCCAAAGTACAAGCAGTATTGGAGCtctgtgtgcgagtgtgtgtgtgtgtgtggatgggtgagttacagtgtgcatgtgtgtgtgacacccAGAAATGTGCTTGATTTTTCTGAGTAATGAGAGCCTGTCCAAATAATGACCTTTCACCTGGCCTCCCTCCAATAAACAGAGCTGCAGACAGACTAAGAAACATACACCATCATTAAAAGAATTCAAACAAGAGATGACATggacagaaagcgagagaaagagagcttgCACTAAGGCAGTGGGAGAGACAGGGAGGCAGCGTTGCTGTTGATCATTGCAGCCATGCTTCAGTTCAGAACATCTGTCGAAGATATTCCTGCGCAATGTGGCGTGAAAGAGTGCGAAGCAGGCACTGGTGAGGAAAATGGCTAGACGCAATCATCATGTCAAGCACTGTAATCTACAGTAATCAAGGCAATGTGGGCAAGGAGCGTTGCGTGAAATGTGTGAAGAAATAAGCTTTTGTTTATGGATCTGATTGATAATCCATCTGATTTCACTTAAAGTGTAATTGGGTTTATCTGAACCCACAAACGCAACTGTGTGTGACGTTGTTAAAGTGTAACAGCCAGCTTTGATGTAACCAGTGCTGGAGCAGGTAGTATCCCACAGTTCCTTGCAGGaggtatgtctctctctctctctctctctctctctctctctctctttctgcatgtgtatgtgttaccCAGAGCAACTTTGTAGTCTCAATCAAAAGCACATCTTCACGCTAGTTCAACAGATCAgcgactaagagtaccatcagtcCATAAAACTCTGCTTGGTAGGTTAGTAcaatatgaaaagaaaacaagacattaaatgaaataaattcttaaaattagaaaaattttctgccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60351 lncRNA downstream 94027 22058153 ~ 22059321 (-) True G51053
TU60333 lncRNA downstream 118186 22034943 ~ 22035162 (-) True G51050
TU60104 lncRNA downstream 149576 22001547 ~ 22003772 (-) False LOC113544581
XR_003404516.2 lncRNA downstream 149615 22001047 ~ 22003733 (-) True LOC113544581
XR_004577808.1 lncRNA downstream 256533 21893534 ~ 21896815 (-) True LOC113544235
XR_004577859.1 lncRNA upstream 1315 22165739 ~ 22177331 (-) False LOC117596869
XR_004577860.1 lncRNA upstream 1315 22165739 ~ 22177331 (-) False LOC117596869
XR_004577858.1 lncRNA upstream 1315 22165739 ~ 22177331 (-) True LOC117596869
TU60485 lncRNA upstream 379803 22544227 ~ 22546490 (-) True G51169
TU60484 lncRNA upstream 401375 22565799 ~ 22566527 (-) False LOC113541574
XM_034301397.1 mRNA downstream 29699 22035832 ~ 22123649 (-) True LOC113540944
XM_034301391.1 mRNA downstream 67844 22035832 ~ 22085504 (-) False LOC113540944
XM_034301408.1 mRNA downstream 67845 22035832 ~ 22085503 (-) False LOC113540944
XM_034301384.1 mRNA downstream 67845 22035832 ~ 22085503 (-) False LOC113540944
XM_026944078.2 mRNA downstream 242555 21908981 ~ 21910793 (-) True LOC113544981
XM_026934474.2 mRNA upstream 15723 22180147 ~ 22204975 (-) True pkdcca
XM_034302709.1 mRNA upstream 102272 22266696 ~ 22299362 (-) True ubr2
XM_034302710.1 mRNA upstream 102272 22266696 ~ 22299362 (-) False ubr2
XM_034302711.1 mRNA upstream 102272 22266696 ~ 22299362 (-) False ubr2
XM_034302708.1 mRNA upstream 102272 22266696 ~ 22299362 (-) False ubr2
TU60345 other downstream 51965 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 203159 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 257071 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 539081 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 1783919 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 609931 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 609931 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 1283484 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1852840 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 2288695 24453119 ~ 24651847 (-) False lyst

Expression Profile