Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577869.1 |
| length | 367 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117596875 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 21525437 ~ 21526067 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU59746 | lncRNA | upstream | 7682 | 21516282 ~ 21517755 (+) | True | G50528 |
| TU59584 | lncRNA | upstream | 175404 | 21313204 ~ 21350033 (+) | False | G50384 |
| TU59582 | lncRNA | upstream | 175404 | 21346165 ~ 21350033 (+) | True | G50384 |
| TU59506 | lncRNA | upstream | 311491 | 21210837 ~ 21213946 (+) | True | G50311 |
| TU59504 | lncRNA | upstream | 315322 | 21206394 ~ 21210115 (+) | True | G50310 |
| TU59732 | lncRNA | downstream | 41348 | 21567415 ~ 21574053 (+) | True | G50516 |
| TU60015 | lncRNA | downstream | 342757 | 21868824 ~ 21869028 (+) | True | G50772 |
| TU60026 | lncRNA | downstream | 348746 | 21874813 ~ 21875015 (+) | True | G50783 |
| XR_003404631.2 | lncRNA | downstream | 478651 | 22004718 ~ 22015489 (+) | True | LOC113545609 |
| TU60120 | lncRNA | downstream | 494263 | 22020330 ~ 22023811 (+) | False | wu:fj16a03 |
| XM_026934272.2 | mRNA | upstream | 2902 | 21517786 ~ 21522535 (+) | True | prop1 |
| XM_026934281.2 | mRNA | upstream | 2902 | 21517786 ~ 21522535 (+) | False | prop1 |
| XM_026939385.2 | mRNA | upstream | 23938 | 21480699 ~ 21501499 (+) | True | socs5b |
| XM_026939376.2 | mRNA | upstream | 23938 | 21480702 ~ 21501499 (+) | False | socs5b |
| XM_026943202.2 | mRNA | upstream | 341619 | 21180935 ~ 21183818 (+) | True | six3a |
| XM_026934261.2 | mRNA | downstream | 5204 | 21531271 ~ 21560099 (+) | True | ttc7a |
| XM_034302940.1 | mRNA | downstream | 14072 | 21540139 ~ 21560099 (+) | False | ttc7a |
| XM_026932609.2 | mRNA | downstream | 80318 | 21606385 ~ 21609100 (+) | False | epcam |
| XM_026932600.2 | mRNA | downstream | 80334 | 21606401 ~ 21609142 (+) | True | epcam |
| XM_034302820.1 | mRNA | downstream | 119669 | 21645736 ~ 21731864 (+) | False | thada |
| trnae-cuc_10 | other | upstream | 519918 | 21005450 ~ 21005519 (+) | True | trnae-cuc_10 |
| TU59013 | other | upstream | 949958 | 20574973 ~ 20575479 (+) | True | G49862 |
| XR_004577569.1 | other | upstream | 2169339 | 19341350 ~ 19356098 (+) | False | sfxn5a |
| TU60121 | other | downstream | 495340 | 22021407 ~ 22023811 (+) | True | wu:fj16a03 |
| TU60615 | other | downstream | 1258261 | 22784328 ~ 22786505 (+) | True | G51271 |
| XR_003404579.1 | other | downstream | 1588118 | 23114185 ~ 23115039 (+) | True | LOC113545030 |
| TU60962 | other | downstream | 1928361 | 23454428 ~ 23455549 (+) | True | G51562 |
| TU61166 | other | downstream | 2170965 | 23697032 ~ 23697294 (+) | True | G51749 |
