Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577870.1 |
| length | 560 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 5 |
| gene id | LOC117596876 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 31657051 ~ 31675951 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66118 | lncRNA | downstream | 23725 | 31633095 ~ 31633326 (-) | True | G56173 |
| TU65916 | lncRNA | downstream | 333587 | 31323154 ~ 31323464 (-) | True | G55992 |
| TU65343 | lncRNA | downstream | 1033846 | 30619177 ~ 30623205 (-) | True | G55449 |
| XR_004577790.1 | lncRNA | downstream | 1038864 | 30593157 ~ 30618187 (-) | True | LOC113542125 |
| XR_004577791.1 | lncRNA | downstream | 1038866 | 30593157 ~ 30618185 (-) | False | LOC113542125 |
| TU66258 | lncRNA | upstream | 11312 | 31687263 ~ 31687472 (-) | False | fndc5a |
| TU66264 | lncRNA | upstream | 52822 | 31728773 ~ 31730112 (-) | True | G56279 |
| TU66256 | lncRNA | upstream | 141302 | 31817253 ~ 31827134 (-) | True | G56271 |
| TU66315 | lncRNA | upstream | 169086 | 31845037 ~ 31846195 (-) | True | G56315 |
| TU66299 | lncRNA | upstream | 183856 | 31859807 ~ 31933590 (-) | False | G56305 |
| XM_026939215.2 | mRNA | downstream | 36720 | 31613602 ~ 31620331 (-) | True | slc30a10 |
| XM_026939213.2 | mRNA | downstream | 108418 | 31545901 ~ 31548633 (-) | True | LOC113541990 |
| XM_034303155.1 | mRNA | downstream | 132151 | 31519040 ~ 31524900 (-) | True | LOC113541870 |
| XM_026939480.2 | mRNA | downstream | 631206 | 31022661 ~ 31025845 (-) | True | si:ch1073-126c3.2 |
| XM_026939518.2 | mRNA | downstream | 650589 | 30920905 ~ 31006462 (-) | True | gfra1a |
| XM_034302651.1 | mRNA | upstream | 2432 | 31678383 ~ 31830932 (-) | False | fndc5a |
| XM_034302648.1 | mRNA | upstream | 2432 | 31678383 ~ 31830928 (-) | False | fndc5a |
| XM_034302647.1 | mRNA | upstream | 2432 | 31678383 ~ 31830928 (-) | False | fndc5a |
| XM_034302646.1 | mRNA | upstream | 2432 | 31678383 ~ 31830928 (-) | False | fndc5a |
| XM_034302645.1 | mRNA | upstream | 2432 | 31678383 ~ 31830928 (-) | True | fndc5a |
| TU66090 | other | downstream | 56366 | 31563555 ~ 31600685 (-) | True | G56150 |
| XR_004577789.1 | other | downstream | 108418 | 31546360 ~ 31548633 (-) | False | LOC113541990 |
| trnag-gcc_4 | other | downstream | 796545 | 30860436 ~ 30860506 (-) | True | trnag-gcc_4 |
| trnag-gcc_3 | other | downstream | 805044 | 30851937 ~ 30852007 (-) | True | trnag-gcc_3 |
| trnag-gcc_2 | other | downstream | 901575 | 30755406 ~ 30755476 (-) | True | trnag-gcc_2 |
| TU66257 | other | upstream | 151863 | 31827814 ~ 31829484 (-) | True | G56272 |
| TU66291 | other | upstream | 161231 | 31837182 ~ 31838235 (-) | True | G56303 |
| XR_004577843.1 | other | upstream | 563650 | 32239601 ~ 32289607 (-) | False | brf1a |
| TU66783 | other | upstream | 674850 | 32350801 ~ 32354482 (-) | False | tmem39b |
| XR_004577855.1 | other | upstream | 698385 | 32374336 ~ 32389144 (-) | False | ndufaf1 |
