Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577878.1 |
| length | 263 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC117596888 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12627677 ~ 12628388 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577879.1 | lncRNA | downstream | 196 | 12627046 ~ 12627481 (-) | True | LOC117596889 |
| TU53462 | lncRNA | downstream | 192194 | 12435274 ~ 12435483 (-) | False | nin |
| TU53441 | lncRNA | downstream | 258328 | 12368513 ~ 12369349 (-) | True | G45249 |
| TU53414 | lncRNA | downstream | 324136 | 12290327 ~ 12303541 (-) | True | G45236 |
| XR_004577842.1 | lncRNA | downstream | 385556 | 12241609 ~ 12242121 (-) | True | LOC117596852 |
| XR_004577880.1 | lncRNA | upstream | 84 | 12628472 ~ 12629256 (-) | True | LOC117596890 |
| TU53526 | lncRNA | upstream | 86296 | 12714684 ~ 12717329 (-) | True | G45305 |
| TU53555 | lncRNA | upstream | 91241 | 12719629 ~ 12721353 (-) | True | G45324 |
| TU53554 | lncRNA | upstream | 93213 | 12721601 ~ 12724180 (-) | True | G45323 |
| TU53553 | lncRNA | upstream | 95177 | 12723565 ~ 12724180 (-) | False | G45323 |
| XM_034301500.1 | mRNA | downstream | 74605 | 12548237 ~ 12553072 (-) | False | LOC113537655 |
| XM_034301503.1 | mRNA | downstream | 74783 | 12548237 ~ 12552894 (-) | False | LOC113537655 |
| XM_034301495.1 | mRNA | downstream | 75270 | 12545878 ~ 12552407 (-) | False | LOC113537655 |
| XM_034301493.1 | mRNA | downstream | 75270 | 12548237 ~ 12552407 (-) | False | LOC113537655 |
| XM_026932269.2 | mRNA | downstream | 75270 | 12548237 ~ 12552407 (-) | True | LOC113537655 |
| XM_026934693.1 | mRNA | upstream | 2825 | 12631213 ~ 12633418 (-) | True | LOC113539135 |
| XM_034302874.1 | mRNA | upstream | 16227 | 12644615 ~ 12663466 (-) | True | dtx4b |
| XM_026945490.2 | mRNA | upstream | 46365 | 12674753 ~ 12683749 (-) | True | zgc:66472 |
| XM_034303011.1 | mRNA | upstream | 57911 | 12686299 ~ 12696128 (-) | True | urb2 |
| XM_026943181.2 | mRNA | upstream | 96104 | 12724492 ~ 12732902 (-) | True | rab4a |
| TU53492 | other | downstream | 93602 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | downstream | 93602 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53378 | other | downstream | 475171 | 12144895 ~ 12152506 (-) | False | tmem254 |
| trnag-gcc_1 | other | downstream | 918993 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU51003 | other | downstream | 3398793 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU53537 | other | upstream | 3425 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
| trnae-cuc_8 | other | upstream | 10864 | 12639252 ~ 12639323 (-) | True | trnae-cuc_8 |
| trnak-cuu_1 | other | upstream | 11142 | 12639530 ~ 12639602 (-) | True | trnak-cuu_1 |
| trnak-cuu_2 | other | upstream | 40105 | 12668493 ~ 12668565 (-) | True | trnak-cuu_2 |
| trnae-cuc_9 | other | upstream | 40432 | 12668820 ~ 12668891 (-) | True | trnae-cuc_9 |
