RNA id: XR_004577887.1


Basic Information

Item Value
RNA id XR_004577887.1
length 1750
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC117596898
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27058878 ~ 27068180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAAAGTCAGAGGCGTCGCTCCCTCGCCGGCTGCTTCCACGGCTCCCTGCCTTACTGCCAGGCCTGCTGGGAATCCTACTGTGTCCTGAAGGGGGACAGATTCAGTGACTGGtgtttatatacagaaaaCGAGCCCAATTTAGAGCAAAGATGGAAGTAAGATTGTCAAGCAGACTGCATCGAAAGAGCCGAGAACACACAAAGCATTTGCACGGAGAGGCAGCAGAGACTGGCCAGGAAAGCAGCCTGGAAACACAGTGCAACAAACAAGTGCATGCAAGGGAagtctcagaagtagcatgggATTACTGTTAATGAGAATACCATTGCTCCAGCCGGAACACTCagatATGAAGACCAATCTGAAGACCACTAgagtgtgctgcagtgttgtGCGTCCTCCTGAACAGCAAATCTATACACTAAAAAGCTATTTTTGGCATCAAAGTGGAAGGAGGGTAAGTAGAACTCTGATTattcaacaaatcaacaaaatgAAGTTTGCCAGTTGGATATGGCCAAGGTGTAGTTCACAAGACACAGTAAGTTATGGCTTCATGCTTTCTGTTCgaaaacaaattaaactgaTCATTAACCAACAGAAATCTTTCCACAAATCAACAGTACATACAAAGGTTGCACTTTCTAGAAACCACCATACTAATAGAGAATGTGTGTTGACGTTGATGCAGAACCAATGTGGCTAAAATCCAATGACACAGTAAAAACAATATGGAAAGATGGCTGGACCCCACTCTAACACTCCACATGATCAACACACTCCCACACAGTGATGACCCTCTTGCTGAGCCTCGTTTTGGCCTCCGCCCTCTCAATGTGAGAACCGGAATGATTCAATGTCACTGGTGAATTTGGTGATTGCGGGTAGAAGATGGAGTTTGAAGCATGATCAAATAAGAAGTAAAAAGAAGGCACAACAAACGGCTTAGAAATGACCATTTACCAGGATACAGCTTTCCAAAACAGCAACGTGCAGTTGGGAGTTTAGATTTTGATTGTCCCTGTTTGTTATACTCTCATCGGCGATTAACGGATCATGTAAGCAGTGAACCAGACCAAACTGTTAAAAGAATTGTTTCAGTTGATATGGAACAGCAAAAACTGAACAAACTGGTGCACATGACAGCAAAAAAGGCTTGAACACAAGCAAAGGAAAAATGAGGTTTGCATGAATTTCCCAGTCCCCCAACACGTCACCAGATAATCAGCTATGAGTTACTGTGTATCTTCACAAAGCATGACCTTGAGAAAGCATGTAGCCCATGATTTCAGTGTGATTTACATTCCCAAAATGGGTCAACAACAGCATTTTCAATCTTTCAAAGACTACattgaaaaagggaaaaataactcaagtattagttattattttagctTGGGTTAAGGTCCTCTGAGATGGAAGTTTAATCATTAAGGAAGGCAATAAAAGGCAAGCACCCATGTTATGCTTCAAAGCTCTCAGAAGATGAACACAAATCAACTTAAATACTGAGGAGGAGAACAAAGGTTGTTAGAAAGGTACTGTGACTCAAAAGCAGATAGGCAAGATCGTAAAATTCATGAGATGTCAAAACTTCCTAAAAAGGACTAACATTCCTTTTCTTACTACAAATTGTGATCTAAGATGGAGCACTCCCACTTCGTTCTGACCTCTGTTTAAAATAGTTTGCTCATGTTGGCATTAATAATCACTAAAAGTAATGTTCTACACCCGAGAGCCATGATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404272.2 lncRNA upstream 1880 27055764 ~ 27056998 (+) True LOC113542178
TU63006 lncRNA upstream 22070 27033849 ~ 27036808 (+) True G53316
TU63053 lncRNA upstream 40032 27017961 ~ 27018846 (+) True G53363
TU62953 lncRNA upstream 124613 26933938 ~ 26934265 (+) True G53280
TU62838 lncRNA upstream 259360 26798698 ~ 26799518 (+) True G53172
TU63002 lncRNA downstream 43364 27111544 ~ 27121939 (+) True G53312
TU63030 lncRNA downstream 174775 27242955 ~ 27244158 (+) True G53340
XR_004577892.1 lncRNA downstream 192951 27261131 ~ 27273177 (+) True LOC117596902
TU63096 lncRNA downstream 268867 27337047 ~ 27341096 (+) True G53402
XR_004577721.1 lncRNA downstream 280730 27348910 ~ 27355673 (+) True LOC113541894
XM_026939387.2 mRNA upstream 125128 26925234 ~ 26933750 (+) True gfral
XM_026939484.2 mRNA upstream 135627 26905497 ~ 26923251 (+) True hcrtr2
XM_026939529.2 mRNA upstream 171799 26873228 ~ 26887079 (+) True fam83b
XM_026939159.2 mRNA upstream 193741 26830224 ~ 26865137 (+) True mlip
XM_034303102.1 mRNA downstream 129729 27197909 ~ 27207245 (+) False znf451
XM_026939377.2 mRNA downstream 129729 27197909 ~ 27207245 (+) False znf451
XM_026939378.2 mRNA downstream 129729 27197909 ~ 27206370 (+) False znf451
XM_026939381.2 mRNA downstream 139148 27207328 ~ 27213122 (+) True bag2
XM_026939201.2 mRNA downstream 176771 27244951 ~ 27257879 (+) True si:ch73-52p7.1
TU63018 other upstream 66167 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3000991 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 3253383 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 3361584 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 3603329 23454428 ~ 23455549 (+) True G51562
XR_003404257.2 other downstream 129729 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 129729 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 129729 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 1379197 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 2037264 29105444 ~ 29105516 (+) True trnav-cac

Expression Profile