RNA id: XR_004577892.1


Basic Information

Item Value
RNA id XR_004577892.1
length 1445
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117596902
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27261131 ~ 27273177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTCCTTCGCTGCAATCTGCTCGATGCTGCTGCGACAAAACGCCTGAACCATGCACAAGTCCAGCAAAAAACCAGAATGTAACAGTCGGCAGGGGACAGGGCTGTGGCCATATGCCTCCGCATTGCCTTCTCGGTGTGCAGGCCTCCTGTCCGCCTAGACTTCAGGCCATCTGTTTAAGGGTGagcttttcttcctcttccagAGCAGACTGTGGTGTGAAGATTACAGTGGATTCACAAGTATTGTTACTCGGCTAATGGTTAGGATTACAGCTCTAATTGCTTCTTATGGATAAAGACTTCAAAGAGCTacacaaaacagcagctctgaatgtTCATCTGAAGTGCATCAATAATAAGGTTATTGTGTCTTCCTCTGAAAGGATTATTTGGTGTAACCCCTTTCCTAAGTGGACCCACCGCATGGATTTAAGCTAAACGTCTGTTTTGGATGAGTTGGGAGCGTGGGGAAGAGATGAAGCGCAGGGCACGGGGAGAATGAAAAAGCTGAGGGCTTAAGAATGGATCGGCCACATTAGAAGCTACCTGCTGGGACTGTACTGCTGACTAAGGGGAAACTTGAAAAAAGTCGGACATTTGGGCCACTGCCCTGgtactgtggggaaaaaacgtGTGGGCCCAACAGACTGCAGGAGGgtgggactgtgtgtgtgtgtgtgtgtgtatgaaggtCTTCCTGCTGTTTGAGTTTCCTTCTCAGGGAGTATATGACACCCCCACAGATCTCCATCCCTGTAACAggcacctcacacacacacacacacacacacacacaccctcctttCGTCCCTTCTCTCCCCTCCTGCATCTCACACACTGAGACATTTTTCCACATTGGCCGGATTAGGAACACTTTCACTTAGATCTATGCAGTCGCCCCCACAGACAAAGAAACACTCGGGGACAGGATTAGTAGGATTAAAGGGGATTCACATATGTCCAGTTCAAGCAATTGGTATTCAAAGCTTTACACTTTCAAATGCCACCAAGAGAGAGCAAAGAAGTCCAGAGCTTTTCTTTGCATTGCAGCACCTTTATGAGGTACGGTTCCCTTTCTGCTCCTACAATACCACTCTGAatacacattttcactttttttggaGGGGATTTTTATTGATTTGGAACACCAAGAAGTGGATGAGATGGAGGGGTTTTGTGTGTCTATAAGTGTGTATGAATAGATGGTCTATTTCTACCTCCTCTAATTTACCAAAGATTGTGTTTATTCCGTACCCTGGTTATCTTTCCACTGATTCAATCTTAAACCTGGAACAGGTTTATTATAATTAGTCATGATTATATGGATCCTCTACAAATATTCTTACTATTAAACCTAGTGTCATTGGAATCGCAACAATTGTTCATATTGCCTGATGCTTTCCAGTACCACTTTTTAATTTAGGCTATTGATACCACAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63030 lncRNA upstream 16973 27242955 ~ 27244158 (+) True G53340
TU63002 lncRNA upstream 139192 27111544 ~ 27121939 (+) True G53312
XR_004577887.1 lncRNA upstream 192951 27058878 ~ 27068180 (+) True LOC117596898
XR_003404272.2 lncRNA upstream 204133 27055764 ~ 27056998 (+) True LOC113542178
TU63006 lncRNA upstream 224323 27033849 ~ 27036808 (+) True G53316
TU63096 lncRNA downstream 63870 27337047 ~ 27341096 (+) True G53402
XR_004577721.1 lncRNA downstream 75733 27348910 ~ 27355673 (+) True LOC113541894
XR_003404268.2 lncRNA downstream 254688 27527865 ~ 27530466 (+) False LOC113542161
XR_003404267.2 lncRNA downstream 254929 27528106 ~ 27530466 (+) True LOC113542161
TU63021 lncRNA downstream 286995 27560172 ~ 27562940 (+) True G53331
XM_026939201.2 mRNA upstream 3252 27244951 ~ 27257879 (+) True si:ch73-52p7.1
XM_026939381.2 mRNA upstream 48009 27207328 ~ 27213122 (+) True bag2
XM_034303102.1 mRNA upstream 53886 27197909 ~ 27207245 (+) False znf451
XM_026939377.2 mRNA upstream 53886 27197909 ~ 27207245 (+) False znf451
XM_026939378.2 mRNA upstream 54761 27197909 ~ 27206370 (+) False znf451
XM_026939449.2 mRNA downstream 1339 27274516 ~ 27276329 (+) True olig3
XM_026939414.2 mRNA downstream 41356 27314533 ~ 27327655 (+) False tnfaip3
XM_026939413.2 mRNA downstream 44831 27318008 ~ 27327655 (+) True tnfaip3
XM_026939044.2 mRNA downstream 69744 27342921 ~ 27347922 (+) True psmb1
XM_026939076.2 mRNA downstream 87665 27360842 ~ 27365471 (+) True pno1
XR_003404257.2 other upstream 53886 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 54736 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 54761 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 268420 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3203244 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 1174200 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1832267 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1834665 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2439081 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2664371 29937548 ~ 29941181 (+) True G55091

Expression Profile