Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577893.1 |
| length | 897 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC117596903 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 5219493 ~ 5222775 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48521 | lncRNA | upstream | 89107 | 5130120 ~ 5130386 (+) | True | G41015 |
| TU48512 | lncRNA | upstream | 139632 | 5079299 ~ 5079861 (+) | True | G41006 |
| TU48405 | lncRNA | upstream | 316874 | 4899491 ~ 4902619 (+) | True | G40908 |
| TU48357 | lncRNA | upstream | 417358 | 4792921 ~ 4802135 (+) | True | G40863 |
| TU48342 | lncRNA | upstream | 436963 | 4782331 ~ 4782530 (+) | True | G40854 |
| TU48526 | lncRNA | downstream | 2173 | 5224948 ~ 5226428 (+) | True | G41019 |
| TU48535 | lncRNA | downstream | 35776 | 5258551 ~ 5308118 (+) | True | G41026 |
| TU48544 | lncRNA | downstream | 42126 | 5264901 ~ 5270195 (+) | True | G41031 |
| TU48545 | lncRNA | downstream | 47540 | 5270315 ~ 5322391 (+) | True | G41032 |
| TU48564 | lncRNA | downstream | 110609 | 5333384 ~ 5335565 (+) | True | G41049 |
| XM_034302684.1 | mRNA | upstream | 327114 | 4882996 ~ 4892379 (+) | True | prmt9 |
| XM_034302686.1 | mRNA | upstream | 327114 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_034302685.1 | mRNA | upstream | 327114 | 4882996 ~ 4892379 (+) | False | prmt9 |
| XM_034302676.1 | mRNA | upstream | 447889 | 4664316 ~ 4771604 (+) | True | nr3c2 |
| XM_026940271.2 | mRNA | downstream | 40807 | 5263582 ~ 5357860 (+) | False | znf827 |
| XM_026940245.2 | mRNA | downstream | 40807 | 5263582 ~ 5356735 (+) | False | znf827 |
| XM_026940255.2 | mRNA | downstream | 40807 | 5263582 ~ 5356611 (+) | True | znf827 |
| XM_034303003.1 | mRNA | downstream | 40807 | 5263582 ~ 5356264 (+) | False | znf827 |
| XM_026937146.2 | mRNA | downstream | 377110 | 5599885 ~ 5626477 (+) | False | si:dkey-27h10.2 |
| TU47789 | other | upstream | 1384882 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 3053709 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 3128187 | 2085465 ~ 2091306 (+) | False | stox2a |
| XR_003404319.2 | other | downstream | 40807 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 95759 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 1981175 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 2426423 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 3242972 | 8465747 ~ 8466312 (+) | True | G42685 |
