RNA id: XR_004577900.1


Basic Information

Item Value
RNA id XR_004577900.1
length 5658
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC117596907
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22729322 ~ 22736667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAGCGTATAAACAGCTGTTTGCTGGAATCCTTTATTACAGAATATGTCTAAAAAGTAACGGTAGCGATATTAAACTGCATATTGATAATTAAAATCGCTGAAAGGAGctttcattattatatattttttccgaGTGGCGTGACGAAGGGACGTCACTTTTACGTAACTCGTACGCATTTCCGCTTCCGTGCGGAAGAAAATGATGCATTTTAAGCTTCAACTGAGTTcctaagtatttttttttagcgaTATAGCAAATATTTGCGAAAGTGAAAATAGGCAACTGTGGACAACATTGATATAGGGACTCCTGTaaccggagagagagagaaactgataTAACTGGTGGAGCTCCCGAGACATGCACGCACACCCCGACACCCATACACATGGCACAAAGCGTGAACTTGAAGCTGCAAGTCTGGGATGGACCAATTTTCTGTTGTTCTTccgtttttgttgtgttttttttttaactgcactTAAAATGTGGACCGAATAAATGAAAGCCTGGAGTTCAGCTAAAAATTCCGACTGCCTCCAAAGTCTTTCTCCACACTCTACAGTGGTTCTACAGTGGTGCAGAAAGTGCCGATGCTTCTGGTCGCTGCAGCTTCACGAAGTTGGCCACCTCTATGTGCAGCAGCTGAGGGACTCCTGTCTCCGGCAGTTGATGGTAGAGGAGTGAGAGGTGGAAGAGATCATCGAGCTGGTGTAACTGGCGCAATTTCTCTCTCGAATCCCAACAGGAATGGCAGAGAGGGTCCAGTGCCTCGGACCCGCATCCCCGGACAAAGCTGTATAGCTGGCAGAGGATCACTTGGTGGTAGCTCCTGCTCCAGGCGTCCTTGGTCTTTCTCgcactctctcttcctgtcctcTCGCATCAGAACTGAGGTGCTGGGGCCCGGAAACCAGCACCGCGGACCCAGTTCCCACCTTGCTTTTCCTCCCCTGCCTCTCTAACGTCTCCCtatgctctgtctctctccccacaGGGGGAACATCCTGTGCCCAGCAGAGCTATGGCAAAGCCCAGGCAGGTGTGTTGGTACTGGGGGGAAGCCGAGTATTTCCAGGATCAGTGTTCCCACATGGAGGTGGGAACTCTGATCCAGATACCTGACGTGCCTCAGGCCTCCCCGCGATCGAGCAGGAATGTACCATTACCAGTGAGTATACAAGGGAGTACACATCAGGCCTTGGTGGACTCGGGGTGTAATCAGACCTCAGTCCACCAAAGCCTGATTCAGTGTGAGGCTTTGGGAAGTGCATATTTGGTGAAGTTaaggtgtgtgcatggggatATTCACGAGTATCCGCTAGTGCCAATCATCATTAAATTCTGGGGGCAAAAGCATAAAGTGGAGGCAGTGGTTAGTCCGCGCCTCACCCAGCGACTAATTCTTgggacaaattggccagggTTTCAGGCATTAgtgagagaaatgtttgtggatgggtcctgcagtagCGAGGCACAGTGTGGAATGTGGCACCTTTGGTTAGGGAGGTGGTGCTGGGGCCATTGACTTCATCTCCACATCAGGGGGACACGGAGGGTGTGGAGTGCTCTGCCCCTCCACCCTAGGCAGGGGAGCAGGTGTGTGACAAGACCCTGAGGCACGATCTcgaccaagtgagagtaattgATGGTCAACAAATCCAACCTTATGTTGTGCTAACCCACACTTTTATATTGagtgatgcaggacactcaaaATAAGGAAGAGACGGCCCAGTTGTTGGTACCAAAGAGCAGTAGGGAACTTCTTTTTTGTGCAGCTGACCATAATCCCATGGCTGGGCAATATCTCAGCGTTGCAGAGGCACTCTTCCATGTTATCTCCCAAGTCGGGGTCCCAAAAGAGCGTGACTGAAGAGGGCACACTCTTTTTGTCAAGTATTATTCATGAACTGTACGAATTATTGGGGATTAAATTGATTCGCACCACTGTTTACCATCTGcagacagatgggctggtcGGACAGTTGaatcaaaagaataaaaatatgatttgtacGTTCGTTCACAGTAATGCTCAGAAATGGGATAAGTGGTTTGAATCTTTGTTGTTTTCAGTGTGAGAGGTCCCACAACCCTCCAGAGGGTTTTCctcatttgaattattgtacGGGCACAAGCCTTGTGGCATCTTAGACGTCATTAAGGAAAATTCAAAGGAGGGATGCTctgacagcaaaaacaaaattcagtacattctggacctgagagcaaaactccacaccttaTGTCACCTAACATAGGAGAATTTGCATTAGGCCAGAGAATGACAATCCCAAATGTATGACAGGGGTACTCTATGCTATGGTAATTTGCACCAGGAGATAAAGTACTTGTTTTACAACCCACATCGAGCTCTAAATTATTCACAAAGTGGCAaggaccctttgaggtcacaaGGCGAGTCAGAGTTAGTCGACTGTGAGGTCAGGTGAACGGATAGAGGTGATGCACGTCAAATATATCACCTGACTCTGATAAATCTGTAGAGAGAAGTGGTCTCTGTGGCTCTGGCAATGGTGGTtccagagagggaggagctggaaCTGGAGGTATGTCTAAAAAGTGTGGCCCAATTCACCCCGGTCCCCTGTGGACACCACCTCTCACTGTCCCAGAGAGCACAAGTTGCCAGGTTGCAAGGGGAaatttctgatgtgttttcgcGTCTACCCGGTCGCACAGACCTCATAGAGCACAACCTCCAGGTGTGGTTGTTTGCAGCTGCCCCTAGTGGTTAcctgagcgcacacacacaaaaaaaatgtggttcaggatgaactcaaggctatgctcTACATGGGAGTAATCAAGGAGTCCTACAGCCATTGAAGCAGTCATATGTCAATATGGTATGTAAATTTGACGCATACCTGATGCCTTGCATTGACGAACTGCTCGATTGCTTAGGCTCACTTTTATTCCACACTGAACTTAACCAAGGGGTATCGGCagattcccttgactccaatatctcgGGAAAACAGCCTTTTCCACTCAGTTTGGattacaccaatttgtcaccctTCCATTTGGGTTGTTTGGAGCCCCAGCGATGTTTCAATGTCTCACAGACAGAATACTCAGCCCACAGGATGCATATGCCGCTGCTTATTTAGATGACAATCATTTATAGTAACAGTTGGCAGCGGTGTTTActgagggctgtcctgagatcctttAGATGGGGaggactcacagcaaacccaaagaagtgtgcagtTGGATGGGTGTAAGTacggtatctgggcttccacttgggccatgggcaggtaCATCCcgaaattgataagacagcgaTTGCGGCCTACCCGAGATCCAAACCAAAAAGGGGGGTGAAGcagttcctggggctggctggctattatcagAGGTTTGTGCCTAATTTTTCAGACTGTCACCAGCCCTCTGACTGACTTCACTAAAAAAGGAAGCACCAGATCCGGTCCATTGGATGGAGTTGGGCGAGCAGGCTTTCTGCCAGGTAAAAGCGGTTTTGTGTTTGGGCCCACTGTTGCATTCTCCTGACtagtcttttccatttgttctGCATACTGACACATAGGAAAGAGGGCTGGGGGCCCTTATGTCACAGGCGGTGGAGGGGGAGGAGTGGCCTGTGCTGTACATCAGCTAGAAGCTGTCAGTAAGGGAGACCAAGTACAGCATGATCGAAAGGAAtgtctggccatcaagtgggcgGTCCTCACCCTCCGTTCCTCTGTTCTGATCATGCCCTGCTCCAATGTCTCCACCGCATGAAGGATGAAGGATCACTCATTGGTATCTGGCTCTTAAGCCATTCAAACTTGAGGTGGGCCACAGACCAGGGGCGCAGATGATGGTGGTGGCAGATTACCTCTCCCGTCACAGGGGGAGTCAGCTGCAGGCCAGACGGCTCCCAAGCCTGAGTCGGGCAGTGGGGGTATGTGGCAGCGGGGTGTTGTCCAGTGTCAGCTAGGGATGGCGTGGAGGCAGGTCGAACTGGCAGGTAAGGAGTGATGAtgctcacctgtgtcttataaccgccagtctacttatttgtgtctctgtgctttcaGGGACTCCCataatgagtgagagagagtgatataGCTAGTGGAGTTGACAagacatgcatacacacacaccatggggCGTGAACTTGAACCTGGTGGAGTTAAAGCTGCTTATGTTAAGTTTTTTGAAAGTGCTCTGTAAAGCACAGATTGAATAAATGCAAGCCCGGAGCTCGGCTAAAATTCCGCCTGCCTcctgagtcttcctccacaccctcacaAACTGGGGTTCTATATcagtatattataataattaatacttaataacagcaataaaatatgtattgGCAGACAGTATTGTTCACACAGGCCATGGGCTGGTTCCTGCCACAGCCATCAGCTCCAGACAGTGACGAGGAGGAGGATCCTGAAGGAACTGCTGCACACCGGAGCCAGGTGTCCATTCCTATGGATCCTGGTAACATACACTCAGATAAACTGAATGGAAAGACCCAGGTGTACTGTTCAGTGTTTTCTAATATTTGTTTGACAGAGCTCGGCAGAGCTCAGCAGGCCTCTTATTGCAACGCAAATGAAATTACCTAAGGCTTTTATCACATTCTCCTTGCAGCTCTCATTTGCATCACTAATAAAGCATCAAAAGAGCCTGTAAGATCAAGTCACTGAGGTGACAAAGAACAATTGTtcattatatattgtatttgtttGAAAGGAACGCGCAGCATACTCTTGGTGTATTTGACTGCACTGTAAAATATCGAccactcagtttttttttttgtataatcttttttctcttcttttcagtATCTTCTCGTTCAGTTTATTTccatattataaaacatttgcGTGTTTCCCAGTAATGACAATATTCATATGCTTAAGTGACTTAAAATCTTCGCCAGGTTATTGATACATATTCAGCTTTTTTGATAGAAGTCGTACCTTCAACGCATAATACCTGCTGCTCACTATTAAATAGCAGCCATCTTGTGGAAAACATTAGCTCCAATGATTGCCTTGCATAGTTATATAATGGCCAAACAGTATGAAGCAAGTGTACAGACCTGATGAACCCTATTGGGCAAACACTCTCATGATAAACTCATATTCCCAGATGATAATGCCCCCATTCTTACTCCTAATATTTTTCAGTAGTGTTTTGATGAACACCAGGATGAAGTCAAAGAAATTCCATGGTCTCTAATCACTAGATATAATCATCATGGGGTGTTCTGGATCACAGACTGTGAAGTAGATATCTACCGCCATATCTCAAAgacctcttctctctctcttctcaaaGACCTCTTCTTAAAGAATGGTTAAACACTCCAACACAAACCATTCACCTCCTTTGATGGCAGCATTCCAAGGAGGAATAAAGCTGTTCTGGGGGCAGGAGTTCTCCTTATTAGGTCCTTGATATTAATATTGTCaaatatttctgtcattttgtcCAACCACTGTATTTGGTCATCTAAAAACCACCTTTAACCGTTTTGGTCACTTTGCACTCTTTTTCTGATCTGTGGAACCGGCTACGTAAGTAAGTTTTGTGCCACCAGTTTCTAACTTTCTCATCTATCCAGTAAACTATGAATCATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60476 lncRNA upstream 179158 22531151 ~ 22550174 (+) True LOC113538739
TU60477 lncRNA upstream 192895 22534338 ~ 22536437 (+) True G51161
XR_003403906.2 lncRNA upstream 279823 22424419 ~ 22449509 (+) True LOC113539127
XR_004577857.1 lncRNA upstream 279823 22444754 ~ 22449509 (+) False LOC113539127
TU60216 lncRNA upstream 441230 22285438 ~ 22288102 (+) True G50938
TU60716 lncRNA downstream 174477 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA downstream 174477 22911144 ~ 22913537 (+) True LOC113540861
TU60728 lncRNA downstream 221733 22958400 ~ 22958620 (+) True G51358
TU60802 lncRNA downstream 333654 23070321 ~ 23070713 (+) True G51422
TU60805 lncRNA downstream 336289 23072956 ~ 23145137 (+) True G51425
XM_026937395.2 mRNA upstream 8444 22696395 ~ 22720888 (+) False dlk2
XM_026937386.2 mRNA upstream 8444 22696395 ~ 22720888 (+) False dlk2
XM_026937376.2 mRNA upstream 8444 22703520 ~ 22720888 (+) True dlk2
XM_026937369.2 mRNA upstream 8444 22707392 ~ 22720888 (+) False dlk2
XM_026937420.2 mRNA upstream 107639 22609366 ~ 22621693 (+) True lrrc73
XM_026937459.2 mRNA downstream 6060 22742727 ~ 22745804 (+) True mea1
XM_026937451.2 mRNA downstream 6060 22742727 ~ 22745804 (+) False mea1
XM_026937432.2 mRNA downstream 134223 22870890 ~ 22890869 (+) True LOC113540824
XM_026937440.2 mRNA downstream 134534 22871201 ~ 22887712 (+) False LOC113540824
XM_034301913.1 mRNA downstream 175039 22911706 ~ 22913552 (+) False LOC113540861
TU60121 other upstream 705521 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1723813 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2153853 20574973 ~ 20575479 (+) True G49862
XR_003403774.2 other upstream 3373234 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 47661 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 377518 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 717761 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 960365 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1057013 23793680 ~ 23805495 (+) False slc29a3

Expression Profile