RNA id: XR_004577903.1


Basic Information

Item Value
RNA id XR_004577903.1
length 406
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC117596908
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 140249 ~ 142236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGAGAACTCCATCAATAAtgctctaaacacacttctcAACGCACCCGGCGCAGAACCATTTGCACCCAACTCCTCCAACTTCACATGTTCTGGAAAACAGATTGAAGGTGACATAGAGTACAGCTTCCAAGATGGAGATACTAATATACCAATCACCTTTCTCAGTGAGCTCCAGAAACAAAGTGGTTATTATACATCAGTTCCTCCATCAACTGCAAGAGTTCCACTGTTGTCTTCTGCAGCTACTCCGATAATACAGTCTGGCTCGGCTGTGGTTCAGACCAGACTTTTGTTCAACTCGTCGTCTGCCGTTCCCAGTGAGAGTTTAGTCCTCAGTGTCATCACATCTCTGCTGAGTTCTCGATACTCAAACCTCAGTGACTCAGTAAATGTGCTGAACTTCA

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577591.1 lncRNA upstream 2401 137328 ~ 137848 (+) True LOC117596477
TU45325 lncRNA upstream 15612 124380 ~ 124637 (+) True G38293
TU45311 lncRNA upstream 27125 112765 ~ 113124 (+) True G38279
TU45310 lncRNA upstream 27580 112426 ~ 112669 (+) True G38278
TU45306 lncRNA upstream 30076 109958 ~ 110173 (+) True G38274
TU45368 lncRNA downstream 127084 269320 ~ 275049 (+) True G38317
TU45374 lncRNA downstream 173093 315329 ~ 315671 (+) True G38322
TU45375 lncRNA downstream 177580 319816 ~ 320020 (+) True G38323
TU45376 lncRNA downstream 196580 338816 ~ 339897 (+) True G38324
XR_004577801.1 lncRNA downstream 481119 623355 ~ 624398 (+) True LOC117596828
XM_034303144.1 mRNA upstream 3019 130641 ~ 137230 (+) True LOC117596909
XM_026911082.2 mRNA upstream 75703 46985 ~ 64546 (+) True pdcd4a
XM_034303145.1 mRNA downstream 116 142352 ~ 153475 (+) True LOC117596910
XM_034303146.1 mRNA downstream 11580 153816 ~ 165514 (+) True LOC117596911
XM_034302586.1 mRNA downstream 58365 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 58365 200601 ~ 213729 (+) False LOC113524725
XM_034303148.1 mRNA downstream 209174 351410 ~ 356704 (+) True LOC117596913
TU45347 other downstream 59543 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 65223 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 546878 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 579891 722127 ~ 744984 (+) False mtap
TU45707 other downstream 921736 1063972 ~ 1065331 (+) True G38577

Expression Profile