RNA id: XR_004577905.1


Basic Information

Item Value
RNA id XR_004577905.1
length 505
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id LOC117596916
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17116954 ~ 17129613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGTTGTGCACTTACTGTGATGAGTTCAGTTTGGCTCTTACCCAATATTTTCTGTCAGTTCTTGTTagctgaaaatgtgtttgtCAAAAAGCAGGAGAGAGTTGCGCCATCACATTCCGAAGGGCTCAATGGATCCAGCACCTCTTCCTCTGCTGATTCAGTGAGGATAAAGACAAAGCACTAATTAGGAGTTTATCCAATATATTACTTCTCTACGCTGGAGAGCTGAACTGTCAGAGAGCCAGAAGCTGAAACTGTGGGAAGATTCCACACTAACTTGCCTCTtggtgacctctgacccctgtCTGGCCCCTCCCCAGAGCTTACACAACCgTAGACTGTCATGGTGCCTCTAAGGAGTGGTGGGAGAAAGAGCACGGGGGGAGACAGTACACAGAGGGCCTGGACAGCCCTGACGCCACAGTGGAGAGACAAGGAGacgaaagaaagagaaaaacagacagacctGCTCATTAacccccctcacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56682 lncRNA downstream 26371 17090382 ~ 17090583 (-) True G47940
TU56621 lncRNA downstream 107905 17008840 ~ 17009049 (-) True G47882
TU56451 lncRNA downstream 328225 16788519 ~ 16788729 (-) True G47735
TU56444 lncRNA downstream 349444 16765709 ~ 16767510 (-) True G47731
TU56286 lncRNA downstream 425355 16676050 ~ 16691599 (-) True G47599
XR_003404617.2 lncRNA upstream 241829 17371442 ~ 17419407 (-) True LOC113545496
TU56927 lncRNA upstream 371020 17500633 ~ 17503860 (-) True G48158
TU57004 lncRNA upstream 519518 17649131 ~ 17662704 (-) True G48195
TU57070 lncRNA upstream 579308 17708921 ~ 17710376 (-) True G48248
TU57076 lncRNA upstream 586622 17716235 ~ 17727208 (-) True G48250
XM_026933946.2 mRNA downstream 134225 16979131 ~ 16982729 (-) True morn4
XM_026933955.2 mRNA downstream 134942 16979131 ~ 16982012 (-) False morn4
XM_026942679.2 mRNA downstream 144483 16968321 ~ 16972471 (-) False st3gal7
XM_026942688.2 mRNA downstream 144521 16968321 ~ 16972433 (-) True st3gal7
XM_026944408.2 mRNA downstream 224211 16877460 ~ 16892743 (-) False LOC113545189
XM_034303043.1 mRNA upstream 2519 17132132 ~ 17276658 (-) False pcdh15a
XM_034303042.1 mRNA upstream 2519 17132132 ~ 17276658 (-) True pcdh15a
XM_034303046.1 mRNA upstream 32457 17162070 ~ 17276658 (-) False pcdh15a
XM_034303044.1 mRNA upstream 32697 17162310 ~ 17276658 (-) False pcdh15a
XM_034303045.1 mRNA upstream 32697 17162310 ~ 17276658 (-) False pcdh15a
XR_004577773.1 other downstream 134225 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other downstream 134225 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other downstream 134225 16979131 ~ 16982729 (-) False morn4
TU55523 other downstream 1700471 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2332220 14779865 ~ 14784734 (-) False sdhaf4
TU56907 other upstream 341574 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 432719 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other upstream 432719 17562332 ~ 17574422 (-) False LOC113538666
TU56951 other upstream 527968 17657581 ~ 17661384 (-) False col13a1
TU57664 other upstream 1200755 18330368 ~ 18613401 (-) True lrmda

Expression Profile