RNA id: XR_004577910.1


Basic Information

Item Value
RNA id XR_004577910.1
length 162
RNA type ncRNA
GC content 0.56
exon number 1
gene id LOC113546173
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2165623 ~ 2165784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atacttacctggcaggggcgataccatgatcaggaaggtggttcgcccaaggcgaggctcagccattgcactcgggctgtgctgacccttgcgaattccccaaatgtgggaatctcgGCTGCATAATTTCTAATAGTGGGGGACTGCGTTCACTCTCCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46052 lncRNA upstream 138 2165170 ~ 2165485 (+) True G38826
TU46035 lncRNA upstream 38956 2124070 ~ 2126667 (+) True G38812
TU46037 lncRNA upstream 40905 2123461 ~ 2124718 (+) False G38812
TU46013 lncRNA upstream 108798 2055651 ~ 2056825 (+) True G38796
TU45970 lncRNA upstream 189993 1921838 ~ 1975630 (+) True G38758
TU46126 lncRNA downstream 145867 2311651 ~ 2312451 (+) True G38895
TU46183 lncRNA downstream 245417 2411201 ~ 2426600 (+) True G38948
TU46198 lncRNA downstream 262028 2427812 ~ 2431087 (+) True G38962
XR_004577844.1 lncRNA downstream 1235011 3400795 ~ 3403106 (+) True LOC117596855
XR_004577906.1 lncRNA downstream 1349317 3515101 ~ 3525121 (+) True LOC117596918
XM_034302865.1 mRNA upstream 1931 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA upstream 1931 2152579 ~ 2163692 (+) False dctd
XM_034302867.1 mRNA upstream 46856 2109068 ~ 2118767 (+) True tmem134
XM_034302866.1 mRNA upstream 46856 2109068 ~ 2118767 (+) False tmem134
XM_026941226.2 mRNA upstream 74280 2025488 ~ 2091343 (+) False stox2a
XM_034302870.1 mRNA downstream 8803 2174587 ~ 2184648 (+) True LOC113544637
XM_034302871.1 mRNA downstream 28165 2193949 ~ 2199535 (+) True LOC113541301
XM_026933437.2 mRNA downstream 1027517 3193301 ~ 3253363 (+) True vegfc
XM_026941131.2 mRNA downstream 1130749 3296533 ~ 3306323 (+) True LOC113543098
XM_034303035.1 mRNA downstream 1142050 3307834 ~ 3325642 (+) False asb5b
TU45993 other upstream 74317 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 74402 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 74782 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 168371 1983657 ~ 1997252 (+) False cdk2ap2
TU45743 other upstream 996984 1166040 ~ 1168639 (+) False trmo
TU47789 other downstream 1666165 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 3097798 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 3152750 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 5038166 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 5483414 7649198 ~ 7666033 (+) False naa15b

Expression Profile