RNA id: trnae-cuc_10


Basic Information

Item Value
RNA id trnae-cuc_10
length 70
RNA type tRNA
GC content 0.66
exon number 1
gene id trnae-cuc_10
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21005450 ~ 21005519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctggaggactagtggttaggccacagtgctctcaccgctgtggcccgggttcgattcccggtcagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59323 lncRNA upstream 54459 20950570 ~ 20950991 (+) True G50140
TU59007 lncRNA upstream 289153 20619938 ~ 20716297 (+) True G49857
TU59015 lncRNA upstream 416220 20585604 ~ 20589230 (+) True G49864
TU59014 lncRNA upstream 419950 20580801 ~ 20585500 (+) True G49863
TU59001 lncRNA upstream 481401 20523816 ~ 20524049 (+) True G49853
TU59354 lncRNA downstream 112543 21118062 ~ 21118862 (+) False camkmt
TU59475 lncRNA downstream 174087 21179606 ~ 21179811 (+) True G50284
TU59491 lncRNA downstream 192758 21198277 ~ 21198508 (+) True G50297
TU59504 lncRNA downstream 200875 21206394 ~ 21210115 (+) True G50310
TU59506 lncRNA downstream 205318 21210837 ~ 21213946 (+) True G50311
XM_034301821.1 mRNA upstream 9072 20986889 ~ 20996378 (+) True ppm1ba
XM_026942324.2 mRNA upstream 119738 20877886 ~ 20885712 (+) True abcg8
XM_026938555.2 mRNA upstream 149748 20802370 ~ 20855702 (+) False cep170aa
XM_026938565.2 mRNA upstream 149748 20802370 ~ 20855702 (+) False cep170aa
XM_026938591.2 mRNA upstream 149748 20802370 ~ 20855702 (+) False cep170aa
XM_026936906.2 mRNA downstream 20214 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA downstream 82422 21087941 ~ 21118964 (+) False camkmt
XM_026943202.2 mRNA downstream 175416 21180935 ~ 21183818 (+) True six3a
XM_026939385.2 mRNA downstream 475180 21480699 ~ 21501499 (+) True socs5b
XM_026939376.2 mRNA downstream 475183 21480702 ~ 21501499 (+) False socs5b
TU59013 other upstream 429971 20574973 ~ 20575479 (+) True G49862
XR_003403773.2 other upstream 1649352 19341350 ~ 19356098 (+) True sfxn5a
TU60121 other downstream 1015888 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1778809 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2108666 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2448909 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 2691513 23697032 ~ 23697294 (+) True G51749