RNA id: trnal-cag


Basic Information

Item Value
RNA id trnal-cag
length 83
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-cag
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12734200 ~ 12734282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53554 lncRNA downstream 10020 12721601 ~ 12724180 (-) True G45323
TU53553 lncRNA downstream 10020 12723565 ~ 12724180 (-) False G45323
TU53555 lncRNA downstream 12847 12719629 ~ 12721353 (-) True G45324
TU53526 lncRNA downstream 16871 12714684 ~ 12717329 (-) True G45305
XR_004577880.1 lncRNA downstream 104944 12628472 ~ 12629256 (-) True LOC117596890
TU53581 lncRNA upstream 40163 12774445 ~ 12776116 (-) True G45340
TU53638 lncRNA upstream 74752 12809034 ~ 12809389 (-) True G45391
TU53656 lncRNA upstream 112225 12846507 ~ 12846713 (-) True G45409
TU53662 lncRNA upstream 124692 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA upstream 124763 12859045 ~ 12862052 (-) False G45415
XM_026943181.2 mRNA downstream 1298 12724492 ~ 12732902 (-) True rab4a
XM_034303011.1 mRNA downstream 38072 12686299 ~ 12696128 (-) True urb2
XM_026945490.2 mRNA downstream 50451 12674753 ~ 12683749 (-) True zgc:66472
XM_034302874.1 mRNA downstream 70734 12644615 ~ 12663466 (-) True dtx4b
XM_026934693.1 mRNA downstream 100782 12631213 ~ 12633418 (-) True LOC113539135
XM_026936811.2 mRNA upstream 17058 12751340 ~ 12758155 (-) True rhoua
XM_026936781.2 mRNA upstream 28279 12762561 ~ 12769000 (-) False tbp
XM_026936789.2 mRNA upstream 28279 12762561 ~ 12768936 (-) True tbp
XM_034302927.1 mRNA upstream 28279 12762561 ~ 12768911 (-) False tbp
XM_026936799.2 mRNA upstream 28279 12762561 ~ 12768755 (-) False tbp
trnae-cuc_9 other downstream 65309 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 65635 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 94598 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 94877 12639252 ~ 12639323 (-) True trnae-cuc_8
TU53537 other downstream 101185 12631813 ~ 12633015 (-) False LOC113539135
XR_004577863.1 other upstream 271204 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1447609 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 2045583 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2679659 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 4244849 16979131 ~ 16982729 (-) False morn4