RNA id: trnam-cau_4


Basic Information

Item Value
RNA id trnam-cau_4
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8469986 ~ 8470057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50426 lncRNA downstream 89271 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 170542 8299180 ~ 8299444 (-) True G42665
TU50402 lncRNA downstream 265581 8204197 ~ 8204405 (-) True G42650
TU50394 lncRNA downstream 279710 8189735 ~ 8190276 (-) True G42642
TU50364 lncRNA downstream 321964 8141051 ~ 8148022 (-) False rgs12b
TU50701 lncRNA upstream 14098 8484155 ~ 8486010 (-) False LOC113539440
TU50703 lncRNA upstream 23011 8493068 ~ 8493304 (-) True G42894
TU50741 lncRNA upstream 81073 8551130 ~ 8551355 (-) True G42914
TU50814 lncRNA upstream 284094 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 297931 8767988 ~ 8769186 (-) True G42987
XM_026933693.2 mRNA downstream 199869 8220599 ~ 8270117 (-) False htt
XM_026933683.2 mRNA downstream 199869 8220599 ~ 8270117 (-) True htt
XM_026933702.2 mRNA downstream 199869 8222098 ~ 8270117 (-) False htt
XM_034303138.1 mRNA downstream 253435 8135223 ~ 8216551 (-) False rgs12b
XM_026934785.2 mRNA upstream 1473 8471530 ~ 8479019 (-) True tmem132a
XM_026935185.2 mRNA upstream 13246 8483303 ~ 8492983 (-) True LOC113539440
XM_026935138.2 mRNA upstream 24079 8494136 ~ 8505726 (-) True vps37c
XM_034303159.1 mRNA upstream 83400 8553457 ~ 8562707 (-) False LOC113539365
XM_026935085.2 mRNA upstream 83400 8553457 ~ 8562707 (-) True LOC113539365
trnam-cau_3 other downstream 844 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 1879 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 2931 8466984 ~ 8467055 (-) True trnam-cau_1
XR_004577908.1 other downstream 1265835 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 1265835 7161474 ~ 7204151 (-) False lef1
trnae-cuc_7 other upstream 301 8470358 ~ 8470429 (-) True trnae-cuc_7
XR_003403913.2 other upstream 285812 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 331186 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 379052 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 754824 9224881 ~ 9228884 (-) True sf3b5