RNA id: trnav-cac


Basic Information

Item Value
RNA id trnav-cac
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnav-cac
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29105444 ~ 29105516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttccgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGgaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63419 lncRNA upstream 608838 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 621546 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 637461 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 656580 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 667607 28436980 ~ 28437837 (+) True G53629
TU64516 lncRNA downstream 12550 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 18977 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 346380 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 575010 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 578493 29684009 ~ 29684999 (+) False G54958
XM_026939137.2 mRNA upstream 12205 29084646 ~ 29093239 (+) True glo1
XM_034302906.1 mRNA upstream 32484 28522346 ~ 29072960 (+) False macrod2
XM_034302907.1 mRNA upstream 32484 28522346 ~ 29072960 (+) False macrod2
XM_026939314.2 mRNA upstream 32484 28522347 ~ 29072960 (+) False macrod2
XM_026939313.2 mRNA upstream 32484 28522348 ~ 29072960 (+) True macrod2
XM_034302925.1 mRNA downstream 3926 29109442 ~ 29135365 (+) False zfand3
XM_034302926.1 mRNA downstream 10051 29115567 ~ 29135365 (+) True zfand3
XM_026939342.2 mRNA downstream 57899 29163415 ~ 29361109 (+) False LOC113542066
XM_026939341.2 mRNA downstream 58070 29163586 ~ 29361109 (+) False LOC113542066
XM_026939339.2 mRNA downstream 59113 29164629 ~ 29361109 (+) False LOC113542066
TU63410 other upstream 657133 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1898199 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1899049 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1899074 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 2112733 26985978 ~ 26992711 (+) True G53328
trnav-aac other downstream 2326 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 606742 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 832032 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1248806 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 1374416 30479932 ~ 30486287 (+) False LOC113542119