RNA id: TCONS_00000668


Basic Information

Item Value
RNA id TCONS_00000668
length 2831
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_000392
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33322174 ~ 33334732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCTAGTATCTCACAGAACACCAGGTTTCAGAGATTTGAGGTCTCCTCTAATGGTACGCTTATAATCCACAAGGTAATTCCTCTGGACCAAGGCCAATACCTCTGCAGTGTTCAAAACCAATTTGGAGAGGACAGGATTGTAGTTAATTTAATAGTTCTGGCTGAGCATCCTAGAGTGCTACAGCCTCGTTATAGAGAAGCCACGGCATACCTTGGACAAACGATTGAGTTTGAATGTCAGTCAAAAGGGCATCCGCAGCCTCGAATTACCTGGGTCTTACCTAATAAGGAAGTTGTACATTCAAGTGTACCTACACATGGCACTCCTGAACACATGATCTCAGTTTTACCTAATGGCACACTTCACATGAAGTCAATTAATCAGATGGATCGAGGAATTTATAAATGCATTGCTAGCAATGCTGCAGGTGCTGATGCCATATCTGTTCGGCTGACTGTTGCTACTTTGGCACCCATCATTCAGCAGCTAAGCCTTGAGAATGTCACTTTTCCAGAGGGAAGCACAGTCTACTTTAATTGCTCAGCCAGGGGTGCCCCTCCACCTTCTATTAACTGGATCACACCTGATGGCATGCAGCTTCATCCCTCACAATTTATTAATGGACGTAACTTGTTTGTTTTTCCCAATGGGACACTCCATCTTCATAGTCTCTCTCTAACAGATGCAGGGAGGTATGAATGCTCAGTTACTAATGTCATCGGCAATGCACGAAGGGCCATTATTTTGACTGTAAGGAAGTCCATGAAGTACTCAAGAGCCAAGATTACATTCTCATCTCCTCAAAAAACAGATGTAGTCTACGGAGGCAGGTTGCACCTGGACTGTATTACATCAGGGAATCCAGAACCCAGGATCATCTGGAGGACTCCATCTAAAAAGCTTGTGGATGCTCACTACAGTTATGATTCAAGGATCAAAGTGTCTGCTAATGGTACATTATCCATAATATCTGTGACAGAAAAAGAAGATGGGGAATACCTCTGCGTTGCTCGCAACAAAATTGGGGATGATTTTGTACCCTTTAAGGTCAGCATCATGGCAAAACCTGCTAAAATTGAGCAGAAGACAGAGGCTGATAGGAAGGTGATGTATGGAGATAACCTAAAAGTTGACTGTGTGGCATCTGGATTACCCAACCCTAAAATTCAGTGGGCACTTCCTGATGGTACTATGATTAACAGTGTCATTAAGTCTGAGCGCAATGTTGGCAGTCGAACTCGCAGGTATGTTGTCTTTGACAATGGAACTCTCCTCTTGAATGAAGTAGGGATGCATGAAGAGGGTAACTATACTTGCTATGCTGAGAACCAAGTTGGAAAAGATGAGATGAACGTGCATGTTAAAGTGGTTGCAGATGTTCCTGTGATTGTGAATAAGACACAAGATGTCATCAGGGTGCTCTATGGAGAATCTGTCTCTTTGCAGTGCAGTGCCAAAGGTGAGCCAACACCCCTTGTATTGTGGTTCTCACCCACTAATAGAGCCATCACTTCATCTTCAGACAAGTATTTTATACACAACAATGGGACTCTAATTATTAAGAAAGTTCAGAGATTTGATGGTGGGAACTACATATGTCTTGCCAGGAACAGTGCAGGGCAAGATCGCAAAGTGACCAGGGTAGAAATCCTTGTCTCTCCACCTGCAATTAATGGCTTCAAAGGCACCACAAACTCACTGAGAGTGTCTAGTGTTAGAGATCAGAGGAAACTGATCGATTGTGACGCTACTGGTACCCCTGCCCCACGAGTCATGTGGGTTCTTCCAGAGAATGTTGTACTTCCTGCACCATATTATGGCAGTCGAATGACTGTATATCGCAATGGCACTTTGGATATCCGTTCAGTGAGAATGACAGATTCAGGTCAGTTAGCCTGCATTGCTCGTAATGAGGGAGGCGAAACAAAGTTCATTGTTCAGCTCCATGTAACAGATATTTTAGACAAGCCAAAACTTAAGAGTCCTAAAATGGAGACATTTTTACTGACTGTGGGCAGGACTATAAACCTGAACTGTTCATTTGAGATTTCACCAACCCTACAGCTAACCTGGATCCTTCAAAATGGCTCCCCGCTTCAAAGTGGTGCACAGTTCAATAAATTCCTACACAGAGCTGATGGGACTTTGGTCATCAGTAATCCTGCTCTTTCAGAGTCAGGCACATATCGTTGTTTGGGACGCAATGCTGCTGGGATGGTTGAAAGAACTGTCACGTTAATTCCAGGGCACAAGCCAGAGATCAGTAACAGGTATAACTCACCTGTTAGTATCATTAATGGGCAGAGTTTAAATCTGCACTGCATGTCAAACACTGATTCTGTCCACCTTACCTGGACCCTGCCAAGCGGAATGATCTTAAACCGACCTCAGAGAGCAGGTCGTTATGCTGTTCTTCCCAACGGAACCCTTTCTATCCAACAGGCCTCTGTCCATGACAGGGGCTCATACACATGTAGGGCCTCAAATGAATATGGCAGCTCCCTCTTATCTGTCCCAGTCATCATTATTGCATATCCACCACGTATCACTAGTGGTCCGGCTCCTGCTACCTATGCCAAAAGAGGAGTTGCAGTTCAACTTAATTGCTTGGCCATAGGTATCCCCAAAGCAGAAGTAGCATGGGAGACCCCCGATCGAACACGGCTTATTGTCAGCCCCCAACCACGGCTTATTGGAAACAAGTATCTCCATCCTCAGGGTTCCTTAATCATCCAGAATCCGACAACAAAAGATGCAGGATTGTATAGATGCACAGCCAGAAATGTAGTTGGGGTTGACACAAAGGGTACTTACCTTTATGTGTACTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-22 Orthologous to human MXRA5 (matrix remodeling associated 5).

Ensembl:

ensembl_id ENSDART00000137151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000651 lncRNA upstream 1310742 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1316479 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1317063 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 1807885 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002848 lncRNA upstream 1969538 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00002850 lncRNA downstream 185741 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 365280 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 899542 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 899677 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 1118598 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00000666 mRNA upstream 4381 33322174 ~ 33324476 (+) False XLOC_000392
TCONS_00000665 mRNA upstream 45168 33217911 ~ 33283689 (+) True XLOC_000391
TCONS_00000662 mRNA upstream 535213 32791920 ~ 32793644 (+) True XLOC_000389
TCONS_00000658 mRNA upstream 634907 32521469 ~ 32693950 (+) False XLOC_000387
TCONS_00000669 mRNA downstream 51583 33383644 ~ 33487375 (+) False XLOC_000393
TCONS_00000670 mRNA downstream 51910 33383971 ~ 33485932 (+) False XLOC_000393
TCONS_00000671 mRNA downstream 58225 33390286 ~ 33404095 (+) False XLOC_000393
TCONS_00000672 mRNA downstream 69713 33401774 ~ 33485932 (+) False XLOC_000393
TCONS_00000673 mRNA downstream 69713 33401774 ~ 33485934 (+) False XLOC_000393
TCONS_00000663 other upstream 112139 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other upstream 112774 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000661 other upstream 622630 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000657 other upstream 814753 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000653 other upstream 1263827 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000675 other downstream 69797 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000681 other downstream 351170 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000684 other downstream 402957 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000685 other downstream 635096 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000688 other downstream 790819 34122880 ~ 34122972 (+) True XLOC_000403

Expression Profile

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