RNA id: TU196943


Basic Information

Item Value
RNA id TU196943
length 904
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G166319
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15895667 ~ 15896570 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATCTTGCAAGACTTCACAGTGTTGCATGTGTAATGATACCAAGAGTTCAAGAGAAAGGCACACACAGTGGCTATATAACCTAATCAAACGAAGCTTAACATCTctaacagaaacaaacatggcACAATCAAAATCAGTAAAAGTCAAAAGAGACTGATTTATAACGATAATCCATAAACATGAAACAACTTAATCAGTTCCAACTTTTGATTGTCCTTCATAgcaaacttttatttcatttataaatactgtacatgaaTGATTGAGCAATCTTTCTATTCATAGACTTTTCTACAAACACTGCCTTCTCCTAAAAATATAGTCTCACATATTGCACTAGTTACAGAACACCTACGTCATgctcacacacaatatacaacaGGTGGACCTCAGAATCTCTAAAAGCTATTGCAGGTTCTTTCCTGCTGTAGACCCATGACAGAAAAGAGCTTATATTCAGTGAGTGACAGGAAAAACTTGAGCTACAAACAACTAAACAAGAGTCTAATCTTAGTGTCAGTATAAAGCTGTGGAATTGGCAAATCACAGCGTGGGACAGCACAGGCATATGAACACCAATTCTTTTCAGTAtgtctttaaaacaaataaacactaatatGGGAAAATGTCATCTTCTTCAAGCCTCAACTACTCTGCAGTTCTGCTTTTCAACTTATAACTAAGGAGTATTTGATTCCGTGTtaacaatattatttataataaatcaaGAATTATGAAATCAAACTACATTCTGATTTCAGTCAGTGCTCTATAAACACCTCATTAATTCTGTCATAAATCCAGACagaagcaaacaaataaacatgcatGATCCACAATCTACTTATATTCAACATTCTGCAATAGATAAGAGCCTAGATAAATCAGTCAAGATCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196899 lncRNA downstream 49412 15664486 ~ 15846255 (-) True G166289
TU196896 lncRNA downstream 288145 15605903 ~ 15607522 (-) True G166286
XR_004579032.1 lncRNA downstream 404659 15481130 ~ 15491008 (-) False LOC113539013
XR_003403894.2 lncRNA downstream 409692 15481131 ~ 15485975 (-) True LOC113539013
TU196520 lncRNA downstream 649758 15245584 ~ 15245909 (-) True G165951
TU197013 lncRNA upstream 36587 15933157 ~ 15933437 (-) True G166380
TU197027 lncRNA upstream 103649 16000219 ~ 16000512 (-) True G166390
TU197138 lncRNA upstream 370659 16267229 ~ 16267515 (-) True G166484
TU197311 lncRNA upstream 548271 16444841 ~ 16446005 (-) True G166633
TU197551 lncRNA upstream 848036 16744606 ~ 16744822 (-) True G166865
XM_026934535.2 mRNA downstream 6129 15883398 ~ 15889538 (-) True rtkn2a
XM_026934171.2 mRNA downstream 17323 15864120 ~ 15878344 (-) True zfyve28
XM_026933793.2 mRNA downstream 32039 15858730 ~ 15863628 (-) False nt5c1ab
XM_034307845.1 mRNA downstream 32742 15858730 ~ 15862925 (-) True nt5c1ab
XM_026934197.2 mRNA downstream 40484 15848037 ~ 15855183 (-) True si:dkey-21a6.5
XM_034308030.1 mRNA upstream 9787 15906357 ~ 15914710 (-) True egr2a
XM_026933853.2 mRNA upstream 21231 15917801 ~ 15981784 (-) True jmjd1ca
XM_026934497.2 mRNA upstream 90516 15987086 ~ 15992896 (-) True ahsa1b
XM_034308383.1 mRNA upstream 104492 16001062 ~ 16007423 (-) False si:dkey-229e3.2
XM_026934496.2 mRNA upstream 104492 16001062 ~ 16007418 (-) True si:dkey-229e3.2
XR_003403876.2 other downstream 132949 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 232172 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 232172 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 573663 15304623 ~ 15322004 (-) False pgfb
XR_004578922.1 other downstream 778303 15109594 ~ 15117364 (-) False capn3a
XR_003403899.1 other upstream 119782 16016352 ~ 16016484 (-) True LOC113539022
XR_004578948.1 other upstream 1349369 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 1349369 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 2409173 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 2409173 18305743 ~ 18316207 (-) False G167566

Expression Profile