RNA id: XM_026933870.2


Basic Information

Item Value
RNA id XM_026933870.2
length 5615
RNA type mRNA
GC content 0.51
exon number 13
gene id mideasb
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16873279 ~ 16898730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGcttgaaagttttttttccgCCCCTGAAAGCAGTGCTCATAAAGCTGAGTGTACCGCAGAAGTGCTACGTGAAATACTGAGGTTGTCACCCATGAACACACAGCGGAAGTCAAGTTCCAGGAGTTTCAAATTGCCTTGATACGCTAGGAGTAGAAGAAGACTTGGTACAAAGGAAAGCAATAGACATGTTTGAGGGTCTGTCAGTTGACACTGTGATTTCTGCTAATGGGATGCTGcagttttgcattttaaagCTGACTTCCATTCCAACTATGCTTAGCAGATTTGGATGACCACAGACTCTTTAAAACCTCTAACTACATTTGTGAATAAAGAGGGACCTAGAAGGTTAATCACACTGGAGAGAGCTTAGTGTGGTTTGGAGGTTTGAACTCTTCTTTACCCCTTCACGAGCTCACTCCAGCCCTCTCTTACCATCCTTATTCATGGTAGTCATGAGTTTGCCAGCTCAACAGAAAGCCAACACAAAGAGGACAGGCAAACGCATCACTTTCTTTAACGACCAGGGCGTTGCAATGAAAGAAGCTTCTCAGCGCACGGAGGGCTCCTACTATGGCATGGGGGCCCCTCCCTCAGAGTCAGGCCACAGTGAGGCTTCGGGTGTAGAAAGCTCCACTGCTGATGCACCACATATGTTTCTCAATTCTGTCATTTTCAGCCCAGAGAAGGGCAGCCAGAACCGAGGCCATTACCAACAGACTATGGCTATGAAGTGGCCACACCAGGAGCTATCCCAGCAACCTCAGCAGAGACCTACAGCCTGGTCTCAGGGTGTCACAACAACGACTTGGGCTCAGAACTATCCTCCATACCTGGGAACGCAGCCTGGTTTTGTGAAGCAGGTGCCTGACGGCATTGCAATACCACAGCAGCAGCCAGCTGCCATTAGGATGGCAGAAAAGCAACAGGCACCTAACACAGGCAGCGAAGCCTTTAGGGATGCTTCTAAAGCCAGCAGCGGTCTGGACtgggagcagcagcagcaagccTTTCAGCAGGGTCACAAACCTGCACTTTTCAATCCCCAGCAGAATGTGACATCTACCACTGGGAACACATCAGTGCTTCAGCCCTTTCAGTTAGCTTTCGGGCAGCCCAGGCAAAACTTGGCAGCAGGCTATTATCAGGTATTCCATGGTAACAGAACCTTGCAAAATGTGAATTTTGTAAACAGCACCCAAACAAATTCCCAAAATCGAATTCAGCAGCAActtcagcagcagcaacagcaacttcagcagcagcagcaacttcagcagcagcagatcCAGAGACTGATGCTTCATAAACAGCAAATTCAGCAGCAAACTCAACAGCTAgtacaccaacaacaacaaatactCCAACAACAGTCACAACAACTAGTGCAATCACAACAGACACAGCCACAACAGCAAGCACAGCATTTAAACCAGATCCAGCAGCAGTCGATACAACAGTTACAAATACAACAGCAAGCACAGCCACTACAACAGCAGTTACAGCAACATTTGCAAAAATCTCAGCAGCTGCAGCAAGTGCAACAGCCCCAATCACTAAATCAGCAAAAAGCCGAACAACTACAAAAGCTGCAGCAGAATCAGCAAGCAGTGGAATATTCCTCTGCTGGCAAACAACCGCCATCACTTTCCCAACCTGAGCAATCAACAGGGCAATCCCAGGACACACCTGAATCAACACAGCCCCCGGATAATGCTCCTCAGTGCCCTCCTGTCCTTCCTCAGGCATCCACTGAGACACAACAACCTGGACCACGGAGGTCTCGGCGCCTCTCCAAAGAGGGTGGAGGACAGGCGACAGAGAATCCTGTCCTCATGCCTGCTGAGCAACAGACTCAGGGCTCTCATAATGGGGCCACTGAAGCAAGTGAGGCTGGAGCCAAGCAGGCCATCCGAGCTGCTCCTACAGGGGTTATCCAGAGCACACGGCGAAAGAGAAGGGTGTCCCAAGAGGCCAACCTGGAGACGTTGGCACAGAAGGCCTCCGAGATGGAGTGCTTACCTTCAGACACAGTCAAGGAGTCTCACAGGTCCTGGAGCCCCCCAGCATCAGGCCCCGGTCGAGGGGTTGGAGAGATGGAGGGTTTGAGTGCCAAACGTGCGAGAGATGAGAGCCTGGTGCCGCTGGTGATCCCAGTGTCAGTTCCTGTACGGCGGGCAGACCCCACTTCTTTGGACCAGGAGCAAACCTCTCTCTCAGCCAGCTGGCCCCAGCGGCCCAGTGACCCAAACCGGAATGACCACAAACCCTCCGTCATCGTCACACGCCGCCGCTCGCTACGGAACTCTCTGTCTGAGAGCTCGAGCCAGAATGGCGGAGCTGATGTTGGCGACGTAGATGGCAAATCATCCAAGGCGAAACGGCGTCCACGGCCGGAGCCGCTCTTCATCCCTCCGCCCAAAGTGAGCACACTGATTGCGCCACCTGTTTACTCTAGCATCACGCCCTACCAGAGTCACCTTCGCTCGCCAGTAAGGCTGGCTGATAACCCGCTCACGCTGCCTCCTTACACCCCTCCACCCATCCTCAGCCCTGTGAGAGAGGGTTCGGGCCTTTACTTCTCGACCATACTCTCTGCTGCTGCGGCTGTCGCAGGAACACAGGGCCTACCGCCGCCCGCGACACCCAAATCAGCCACCCGTAGCCTCCTCCGCTCTAACAGCGCTGAGATTACCCCTCCAGTGTTGTCTGCTATGAGCGAGGCTACTCCTGTCAGCGTTGAGCCGCGAATAAACATTGGGCAGAGGTACCAGGCGGAGGTGCCCGAGCTGAAGGAGCGCTCGGCTGCGCAGCTCGACCCACACAAGGCTGAGCTGGTGTGGGCGCCACTGCCTGAGCTGGAGTCCAAAGGCCAGCAGCAGGAAAGAGTGAATGACCTCATGCACCTGGCCTGCTCCAGTGCACTGTGTGGAGGAGGGACCAATCAGGAGCTGGCCATGCACTGTCTCCACGAGTGCAAGGGTGATATCATGGGATCCCTTGCCCTCCTTCTTTTGAAAAACCCCATCTTTCCCAAATTTCATCCTCTGGCAGATTACCACTACTCCGgCTCAGACAACTGGACACCTGAGGAGAGACGCGTCTTCAACAAGGGCATCTCTACCTACAAGAAGGACTTCTTCATGGTGCAGAAAATGGTAAACTCCAAGACAGTGGCTCAGTGTGTGGAGTTCTATTACACCTATAAGAAGCAGGTGAAGATCGGCAGGAATGGCACACTCATCTACGGAGAAGCAGAGCTTCCTGAAACGCGACCCACAGAGGAGGAAGTGGACTATAAAGGTTCACAGAGATTTGATTTGCgaaaggaagaggaagaggacagGAAGTGGGAGGTATCAGGGGACAGGAAGCGAGAGAGCAGCCCTGACAGGGTGACACAATCTCTACAGGCCAGTGAAAATACTGCTGCAGTACTGGTCTTAAGGAGTCAGGAGGAGGGAAGACGGGACCATCCAACGGTTGCGGTGAGCCATGCCCCCACAGTGCCTCCTAAACCCCGGCCAGAGAGCACGGTGCGGAAGAGCGGGGTCGGGACAAAAGGCTCTGCAGGACAAGAGGGAGAATTTCCCTGCAAGAAATGTGGAAGGATATTCTATAAGGTGAAAAGCCGGAGCGCACACATGAAGAGCCATGCTGAGCAAGAGAAGAAAGCAGCGGCTCTCAGGCAGCGGGAGGCTGAGGAGCGCGCAGCAGCGGCCGCAGCAGCCTTAATGGCTGCTCAGCAGAATGGATCTCGAGGGGAGCAAGCAGCAACGCGACGAGCCAGCAGCGAGGACTCCTCGGATGAGGAAGACTCCACAGATGATGAAGACTGGCACTAGCAAATACTCTCTTTTTCTGCATGGCGGAGCTGGGACGCTTCTCCAACGTGACCTGATACATTGGTCTGCGCGGGGAGGAATAACGGGGAGATGGAACATGAACGCCTTCAGGGACTAACTTACTcccttaatgtgtgtgtgcgtgtgtgcgtgtgtgtgcatgcgtgcgcGCATGCGTgcaagcatgtgtgtgcatgtgccaGGGTGTGAGTGTCAAAGAGAAGCATTCAGGGTTTCTCATTCAGACATAGGGCTATAGGGAGTACAAgccaagggtgtgtgtgtgtgtgtgtgtgcgcgtgcgtgtgtgtgtgggcatgtgccAGAGAGTTAGTGTCAAAGAGAAGCATTCAGGGTTTCTCGTTCAGACATAGGGCTATAGGGAGTACAAGCcaaggagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagtgagGGGCAGTACCAAACACTGTCCTATGACCGTTTCAGTCCCCTTACGCACACTGGGTGCAGCCCAGGAGTTCCACCTGCTTACCCTATCCACCTGCCCACCTACCCAGCACAGACTCGCTTCACCCCTTTATTATCCGCTGTGATTCAGGCCAGCATGCATTCAGTGCTCTGGACACTGCAGGACATGTAACCTGGCAAAGACAGGAGGACGGACTAATGTCACTCTTGATACGTTTTGTCCTCTATTGAGTTTTCTAAATGAAATCTGTTTGTGTGACTCTTTTACGGTTGACTGCCAAAAGCTTGCACAGCTGTACATGTGcacctgtttgtttttttttttttttttttttttgtagtgctGTAACTTTGGGCTTTGGTGTTTTTGTTACGTTTACTTCTGGCCACCTCGCTGATGCCTTGGATGTTTTTGACACTTTTAATCGTGACATGACAATCAATTTTACAAAGGTTCTTTTTTATATATCCAACAAAGTATCATTGTTTTTGATATattccttattattattgttgttataattgttattatCCTTCTTAGTGTTGTCATTGTactgttttattgttatattgtttttgGGAAAggtaacttttttgttttgaagttCTTTTTATCATTTAGCTGTTAGTTTATTTAAGACTTTTGCTACCTGTGTTTGCGGTTTGTAAAGCTTCTCTAAGGTGTTAGACAGGAAAAGACAGAACCCGAGGGTGAAAGTGCAATAGAACAATTTGAAATCTTGATGCAAATGTGCTACCACtcttccctcctcctcctcctcctcctcctcctccattccCTGTCCAACTCCAACATAATCTGAACTTGAACTGAACCCTAATGCAGCCTCGATTGAACAAGATCATtagaagatatttatttaatgttattttttgggggaaaaagagaaCAAATGTGCTTGAGTGGCTAAAGAATGAAGCGTAACGTTTGTAAATTTCTAGCGCTGCGCCGTCACACTCCAACTCTGCTGGCCCAGCACTTGGCGatatcaccatggcaacagagGCTGCTGAACCCCCATCCTCTAAGAACAGCCACACTGTGGAGATCTCAGCCGAGAGTAACGGCTCCAATTACTGCTCATCACACTTCAGTCTGCTATgcactctgtgtctgtgtgtttgtgtgtgtgttagttgcCCTGTGGGTGGATGTAGAAGTGTGTTTTTGCacacatatgtgtatgtgtgcatgtatgtgtggaTGTGTATGGGTGTTAACACcaataataaaaactgtttgAAACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197613 lncRNA downstream 8263 16860838 ~ 16865427 (-) True LOC113538645
TU197616 lncRNA downstream 8263 16860838 ~ 16865427 (-) False LOC113538645
TU197619 lncRNA downstream 12461 16839081 ~ 16861229 (-) False LOC113538645
XR_004578933.1 lncRNA downstream 12870 16840434 ~ 16860820 (-) False LOC113538645
TU197551 lncRNA downstream 128868 16744606 ~ 16744822 (-) True G166865
TU197674 lncRNA upstream 26546 16925276 ~ 16928196 (-) True G166967
TU197740 lncRNA upstream 68726 16967456 ~ 16969965 (-) True G167011
TU197736 lncRNA upstream 153754 17052484 ~ 17055548 (-) True G167007
TU197772 lncRNA upstream 178252 17076982 ~ 17079705 (-) True LOC117598293
XR_004578973.1 lncRNA upstream 180055 17078785 ~ 17088776 (-) False LOC117598293
XM_026934426.2 mRNA downstream 62474 16776703 ~ 16811216 (-) True mta1
XM_026933818.2 mRNA downstream 98114 16761588 ~ 16775576 (-) True tmem229b
XM_026934346.2 mRNA downstream 216320 16626955 ~ 16657370 (-) False plekhh1
XM_026934345.2 mRNA downstream 216320 16626955 ~ 16657370 (-) True plekhh1
XM_026934099.2 mRNA downstream 253313 16542771 ~ 16620377 (-) False slc25a21
XM_026933876.2 mRNA upstream 8992 16907722 ~ 16922047 (-) True tmem62
XM_026934436.2 mRNA upstream 30115 16928845 ~ 16937439 (-) True hadhab
XM_026933917.2 mRNA upstream 41897 16940627 ~ 16953297 (-) True slc30a1b
XM_026933915.2 mRNA upstream 41897 16940627 ~ 16953153 (-) False slc30a1b
XM_026934332.2 mRNA upstream 236748 17135478 ~ 17155642 (-) False impg1b
XR_003403899.1 other downstream 857206 16016352 ~ 16016484 (-) True LOC113539022
XR_003403876.2 other downstream 1110972 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 1210195 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 1210195 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 1551686 15304623 ~ 15322004 (-) False pgfb
XR_004578948.1 other upstream 347209 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 347209 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 1407013 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 1407013 18305743 ~ 18316207 (-) False G167566
TU198375 other upstream 1480167 18378897 ~ 18382455 (-) False gdf7

Expression Profile